############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings ExperimentHub_2.8.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ExperimentHub.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘ExperimentHub/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ExperimentHub’ version ‘2.8.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ExperimentHub’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:183-189: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:190-211: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:212-220: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:221-225: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:237-241: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:247-258: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:259-262: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:263-266: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:267-274: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:275-282: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:283-288: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:295-299: \item in \describe must have non-empty label checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘ExperimentHub.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/home/biocbuild/bbs-3.17-bioc/meat/ExperimentHub.Rcheck/00check.log’ for details.