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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:EpiCompare.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings EpiCompare_1.4.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/EpiCompare.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EpiCompare/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EpiCompare’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EpiCompare’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘EpiCompare-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_chromHMM
> ### Title: Plot ChromHMM heatmap
> ### Aliases: plot_chromHMM
> 
> ### ** Examples
> 
> ### Load Data ###
> data("CnT_H3K27ac") # example dataset as GRanges object
> data("CnR_H3K27ac") # example dataset as GRanges object 
> ### Create Named Peaklist ###
> peaklist <- list(CnT=CnT_H3K27ac, CnR=CnR_H3K27ac) 
> ### Run ###
> my_plot <- plot_chromHMM(peaklist = peaklist,
+                          cell_line = "K562",
+                          genome_build = "hg19") 
--- Running plot_chromHMM() ---
Returning 1 matching cell line(s).
Error in vroom_(file, delim = delim %||% col_types$delim, col_names = col_names,  : 
  bad value
Calls: plot_chromHMM ... FUN -> <Anonymous> -> read_delim -> <Anonymous> -> vroom_
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
   20.   │                   ├─base::withVisible(...)
   21.   │                   └─evaluate:::eval_with_user_handlers(expr, envir, enclos, user_handlers)
   22.   │                     └─base::eval(expr, envir, enclos)
   23.   │                       └─base::eval(expr, envir, enclos)
   24.   └─EpiCompare:::get_chromHMM_annotation(cell_line = params$chromHMM_annotation)
   25.     └─base::lapply(...)
   26.       └─EpiCompare (local) FUN(X[[i]], ...)
   27.         └─genomation::readBed(chrHMM_url)
   28.           └─readr::read_delim(...)
   29.             └─vroom::vroom(...)
   30.               └─vroom:::vroom_(...)
  
  [ FAIL 1 | WARN 7 | SKIP 0 | PASS 82 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/Users/biocbuild/bbs-3.17-bioc/meat/EpiCompare.Rcheck/00check.log’
for details.