Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCD[E]FGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-16 11:37:02 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 664/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EWCE 1.8.2  (landing page)
Alan Murphy
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/EWCE
git_branch: RELEASE_3_17
git_last_commit: 9caffb0
git_last_commit_date: 2023-05-22 12:38:19 -0400 (Mon, 22 May 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for EWCE on merida1


To the developers/maintainers of the EWCE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EWCE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: EWCE
Version: 1.8.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE
StartedAt: 2023-10-15 18:15:07 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 18:17:44 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 156.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EWCE
###
##############################################################################
##############################################################################


* checking for file ‘EWCE/DESCRIPTION’ ... OK
* preparing ‘EWCE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EWCE.Rmd’ using rmarkdown

-- mouse

-- human
[WARNING] Could not parse YAML metadata at line 19 column 1: :10:28: Unexpected '
  '
pandoc-citeproc: reference skene_2016 not found
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'EWCE.knit'
--- finished re-building ‘EWCE.Rmd’

--- re-building ‘extended.Rmd’ using rmarkdown

Quitting from lines 100-116 [unnamed-chunk-3] (extended.Rmd)
Error: processing vignette 'extended.Rmd' failed with diagnostics:
failed to load resource
  name: EH5367
  title: mouse_to_human_homologs
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building ‘extended.Rmd’

SUMMARY: processing the following file failed:
  ‘extended.Rmd’

Error: Vignette re-building failed.
Execution halted