############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CopywriteR -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CopywriteR ### ############################################################################## ############################################################################## * checking for file 'CopywriteR/DESCRIPTION' ... OK * preparing 'CopywriteR': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'CopywriteR.Rnw' using Sweave Loading required package: BiocParallel Warning: Package 'CopywriteR' is deprecated and will be removed from Bioconductor version 3.18 Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : pseudoinverse used at 0.979 Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : neighborhood radius 0.001 Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : reciprocal condition number 0 Warning in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : There are other near singularities as well. 1e-06 Error: processing vignette 'CopywriteR.Rnw' failed with diagnostics: chunk 10 (label = CopywriteR) Error in value[[3L]](cond) : The GC-content and mappability normalization did not work due to a failure to calculate loesses. This can generally be solved by using larger bin sizes. Stopping execution of the remaining part of the script... --- failed re-building 'CopywriteR.Rnw' SUMMARY: processing the following file failed: 'CopywriteR.Rnw' Error: Vignette re-building failed. Execution halted