############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CoSIA -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoSIA ### ############################################################################## ############################################################################## * checking for file 'CoSIA/DESCRIPTION' ... OK * preparing 'CoSIA': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'CoSIA_Intro.Rmd' using rmarkdown trying URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/CoSIAdata_1.0.0.tar.gz' Content type 'application/x-gzip' length 288970 bytes (282 KB) ================================================== downloaded 282 KB * installing *source* package 'CoSIAdata' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoSIAdata) The downloaded source packages are in 'F:\biocbuild\bbs-3.17-bioc\tmpdir\RtmpI1d9Ls\downloaded_packages' Quitting from lines 104-105 [getTissues_2] (CoSIA_Intro.Rmd) Error: processing vignette 'CoSIA_Intro.Rmd' failed with diagnostics: numbers of columns of arguments do not match --- failed re-building 'CoSIA_Intro.Rmd' SUMMARY: processing the following file failed: 'CoSIA_Intro.Rmd' Error: Vignette re-building failed. Execution halted