Back to Multiple platform build/check report for BioC 3.17:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-16 11:36:02 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 437/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoSIA 1.0.0  (landing page)
Amanda D. Clark
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/CoSIA
git_branch: RELEASE_3_17
git_last_commit: d7f2302
git_last_commit_date: 2023-04-25 11:44:57 -0400 (Tue, 25 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for CoSIA on palomino3


To the developers/maintainers of the CoSIA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoSIA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CoSIA
Version: 1.0.0
Command: chmod a+r CoSIA -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoSIA
StartedAt: 2023-10-15 18:23:37 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 18:40:34 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 1017.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r CoSIA -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoSIA
###
##############################################################################
##############################################################################


* checking for file 'CoSIA/DESCRIPTION' ... OK
* preparing 'CoSIA':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CoSIA_Intro.Rmd' using rmarkdown
trying URL 'https://bioconductor.org/packages/3.17/data/experiment/src/contrib/CoSIAdata_1.0.0.tar.gz'
Content type 'application/x-gzip' length 288970 bytes (282 KB)
==================================================
downloaded 282 KB

* installing *source* package 'CoSIAdata' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CoSIAdata)

The downloaded source packages are in
	'F:\biocbuild\bbs-3.17-bioc\tmpdir\RtmpI1d9Ls\downloaded_packages'

Quitting from lines 104-105 [getTissues_2] (CoSIA_Intro.Rmd)
Error: processing vignette 'CoSIA_Intro.Rmd' failed with diagnostics:
numbers of columns of arguments do not match
--- failed re-building 'CoSIA_Intro.Rmd'

SUMMARY: processing the following file failed:
  'CoSIA_Intro.Rmd'

Error: Vignette re-building failed.
Execution halted