############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r CoGAPS -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoGAPS ### ############################################################################## ############################################################################## * checking for file 'CoGAPS/DESCRIPTION' ... OK * preparing 'CoGAPS': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'CoGAPS.Rmd' using rmarkdown Data Model: Dense, Normal Sampler Type: Sequential Loading Data...Done! (00:00:00) -- Equilibration Phase -- 10000 of 50000, Atoms: 74(A), 29(P), ChiSq: 299, Time: 00:00:00 / 00:00:00 20000 of 50000, Atoms: 80(A), 36(P), ChiSq: 163, Time: 00:00:00 / 00:00:00 30000 of 50000, Atoms: 85(A), 40(P), ChiSq: 125, Time: 00:00:00 / 00:00:00 40000 of 50000, Atoms: 86(A), 42(P), ChiSq: 104, Time: 00:00:01 / 00:00:02 50000 of 50000, Atoms: 90(A), 36(P), ChiSq: 114, Time: 00:00:01 / 00:00:02 -- Sampling Phase -- 10000 of 50000, Atoms: 85(A), 38(P), ChiSq: 118, Time: 00:00:01 / 00:00:01 20000 of 50000, Atoms: 97(A), 37(P), ChiSq: 112, Time: 00:00:02 / 00:00:02 30000 of 50000, Atoms: 81(A), 36(P), ChiSq: 119, Time: 00:00:02 / 00:00:02 40000 of 50000, Atoms: 84(A), 34(P), ChiSq: 80, Time: 00:00:03 / 00:00:03 50000 of 50000, Atoms: 85(A), 37(P), ChiSq: 113, Time: 00:00:03 / 00:00:03 trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' Content type 'application/octet-stream' length 433262849 bytes (413.2 MB) ================================================= downloaded 408.1 MB Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd) Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics: download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed --- failed re-building 'CoGAPS.Rmd' SUMMARY: processing the following file failed: 'CoGAPS.Rmd' Error: Vignette re-building failed. Execution halted