############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS ### ############################################################################## ############################################################################## * checking for file ‘CoGAPS/DESCRIPTION’ ... OK * preparing ‘CoGAPS’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CoGAPS.Rmd’ using rmarkdown Data Model: Dense, Normal Sampler Type: Sequential Loading Data...Done! (00:00:00) -- Equilibration Phase -- 10000 of 50000, Atoms: 76(A), 28(P), ChiSq: 349, Time: 00:00:00 / 00:00:00 20000 of 50000, Atoms: 79(A), 33(P), ChiSq: 147, Time: 00:00:00 / 00:00:00 30000 of 50000, Atoms: 86(A), 42(P), ChiSq: 93, Time: 00:00:01 / 00:00:03 40000 of 50000, Atoms: 81(A), 41(P), ChiSq: 140, Time: 00:00:01 / 00:00:02 50000 of 50000, Atoms: 77(A), 39(P), ChiSq: 109, Time: 00:00:02 / 00:00:04 -- Sampling Phase -- 10000 of 50000, Atoms: 85(A), 40(P), ChiSq: 155, Time: 00:00:02 / 00:00:03 20000 of 50000, Atoms: 85(A), 37(P), ChiSq: 129, Time: 00:00:03 / 00:00:04 30000 of 50000, Atoms: 83(A), 34(P), ChiSq: 114, Time: 00:00:03 / 00:00:03 40000 of 50000, Atoms: 78(A), 33(P), ChiSq: 107, Time: 00:00:04 / 00:00:04 50000 of 50000, Atoms: 87(A), 38(P), ChiSq: 128, Time: 00:00:04 / 00:00:04 trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' Content type 'application/octet-stream' length 433262849 bytes (413.2 MB) ====== downloaded 51.9 MB Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd) Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics: download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed --- failed re-building ‘CoGAPS.Rmd’ SUMMARY: processing the following file failed: ‘CoGAPS.Rmd’ Error: Vignette re-building failed. Execution halted