############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL BUS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘BUS’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c BUS.cpp -o BUS.o BUS.cpp: In function ‘SEXPREC* MINempirical(SEXP, SEXP, SEXP, SEXP, SEXP)’: BUS.cpp:22:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 22 | for( int i=0; i<*ncols1; ++i ) | ^~~ In file included from /home/biocbuild/bbs-3.17-bioc/R/include/Rdefines.h:41, from BUS.h:9, from BUS.cpp:1: /home/biocbuild/bbs-3.17-bioc/R/include/Rinternals.h:369:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 369 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ BUS.cpp:27:10: note: in expansion of macro ‘UNPROTECT’ 27 | UNPROTECT(6); | ^~~~~~~~~ g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o BUS.so BUS.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-BUS/00new/BUS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BUS)