Back to Build/check report for BioC 3.16 experimental data
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for geneLenDataBase on nebbiolo2


To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 141/416HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.34.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_16
git_last_commit: e26cf8e
git_last_commit_date: 2022-11-01 10:45:36 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.34.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings geneLenDataBase_1.34.0.tar.gz
StartedAt: 2023-04-11 11:48:43 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 11:56:07 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 444.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings geneLenDataBase_1.34.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0640.0040.068
anoCar1.genscan.LENGTH0.0390.0000.039
anoCar1.xenoRefGene.LENGTH0.9430.0000.943
anoGam1.ensGene.LENGTH0.0630.0000.062
anoGam1.geneid.LENGTH0.0720.0040.076
anoGam1.genscan.LENGTH0.0270.0040.031
apiMel1.genscan.LENGTH0.0270.0000.027
apiMel2.ensGene.LENGTH0.0710.0000.070
apiMel2.geneid.LENGTH0.0370.0000.037
apiMel2.genscan.LENGTH0.0260.0000.025
aplCal1.xenoRefGene.LENGTH0.4020.0000.402
bosTau2.geneSymbol.LENGTH0.0340.0000.035
bosTau2.geneid.LENGTH0.2870.0000.288
bosTau2.genscan.LENGTH0.0740.0000.074
bosTau2.refGene.LENGTH0.0350.0000.035
bosTau2.sgpGene.LENGTH0.0980.0000.099
bosTau3.ensGene.LENGTH0.0970.0080.106
bosTau3.geneSymbol.LENGTH0.0320.0000.032
bosTau3.geneid.LENGTH0.1110.0040.115
bosTau3.genscan.LENGTH0.0710.0000.072
bosTau3.refGene.LENGTH0.0310.0000.030
bosTau3.sgpGene.LENGTH0.0860.0040.090
bosTau4.ensGene.LENGTH0.0900.0040.095
bosTau4.geneSymbol.LENGTH0.0270.0040.032
bosTau4.genscan.LENGTH0.0590.0000.060
bosTau4.nscanGene.LENGTH0.0270.0000.028
bosTau4.refGene.LENGTH0.0290.0000.029
braFlo1.xenoRefGene.LENGTH0.440.000.44
caeJap1.xenoRefGene.LENGTH0.3030.0000.303
caePb1.xenoRefGene.LENGTH0.3930.0040.398
caePb2.xenoRefGene.LENGTH0.430.000.43
caeRem2.xenoRefGene.LENGTH0.410.000.41
caeRem3.xenoRefGene.LENGTH0.4590.0080.468
calJac1.genscan.LENGTH0.0850.0000.085
calJac1.nscanGene.LENGTH0.1070.0000.107
calJac1.xenoRefGene.LENGTH0.8790.0000.880
canFam1.ensGene.LENGTH0.1040.0000.104
canFam1.geneSymbol.LENGTH0.0050.0000.004
canFam1.genscan.LENGTH0.0520.0040.055
canFam1.nscanGene.LENGTH0.0630.0000.062
canFam1.refGene.LENGTH0.0050.0000.004
canFam1.xenoRefGene.LENGTH0.5880.0050.593
canFam2.ensGene.LENGTH0.0770.0030.079
canFam2.geneSymbol.LENGTH0.0050.0000.004
canFam2.genscan.LENGTH0.0520.0000.052
canFam2.nscanGene.LENGTH0.0590.0000.060
canFam2.refGene.LENGTH0.0040.0000.005
canFam2.xenoRefGene.LENGTH0.5930.0000.592
cavPor3.ensGene.LENGTH0.0760.0040.079
cavPor3.genscan.LENGTH0.0920.0010.092
cavPor3.nscanGene.LENGTH0.0590.0030.062
cavPor3.xenoRefGene.LENGTH1.3570.0001.357
cb1.xenoRefGene.LENGTH0.4120.0040.415
cb3.xenoRefGene.LENGTH0.3390.0000.339
ce2.geneSymbol.LENGTH0.0610.0000.060
ce2.geneid.LENGTH0.0540.0000.054
ce2.refGene.LENGTH0.0560.0000.057
ce4.geneSymbol.LENGTH0.0590.0000.059
ce4.refGene.LENGTH0.0540.0000.053
ce4.xenoRefGene.LENGTH0.0730.0000.072
ce6.ensGene.LENGTH0.0850.0000.084
ce6.geneSymbol.LENGTH0.0580.0000.057
ce6.refGene.LENGTH0.0560.0000.056
ce6.xenoRefGene.LENGTH0.0770.0000.078
ci1.geneSymbol.LENGTH0.0040.0000.005
ci1.refGene.LENGTH0.0040.0000.004
ci1.xenoRefGene.LENGTH0.1560.0000.155
ci2.ensGene.LENGTH0.0590.0000.059
ci2.geneSymbol.LENGTH0.0040.0000.004
ci2.refGene.LENGTH0.0040.0000.003
ci2.xenoRefGene.LENGTH0.2360.0000.236
danRer3.ensGene.LENGTH0.0930.0000.094
danRer3.geneSymbol.LENGTH0.0470.0000.047
danRer3.refGene.LENGTH0.0420.0000.042
danRer4.ensGene.LENGTH0.10.00.1
danRer4.geneSymbol.LENGTH0.0440.0080.051
danRer4.genscan.LENGTH0.0550.0040.059
danRer4.nscanGene.LENGTH0.0900.0000.089
danRer4.refGene.LENGTH0.0460.0000.046
danRer5.ensGene.LENGTH0.1260.0040.130
danRer5.geneSymbol.LENGTH0.0460.0000.045
danRer5.refGene.LENGTH0.0350.0040.039
danRer5.vegaGene.LENGTH0.0470.0000.048
danRer5.vegaPseudoGene.LENGTH0.0020.0000.003
danRer6.ensGene.LENGTH0.1120.0000.111
danRer6.geneSymbol.LENGTH0.0520.0000.052
danRer6.refGene.LENGTH0.0370.0040.042
danRer6.xenoRefGene.LENGTH0.6210.0000.622
dm1.geneSymbol.LENGTH0.0620.0000.063
dm1.genscan.LENGTH0.0220.0000.023
dm1.refGene.LENGTH0.0550.0000.054
dm2.geneSymbol.LENGTH0.0570.0000.056
dm2.geneid.LENGTH0.0300.0040.034
dm2.genscan.LENGTH0.020.000.02
dm2.nscanGene.LENGTH0.0490.0000.048
dm2.refGene.LENGTH0.0450.0040.048
dm3.geneSymbol.LENGTH0.0590.0010.060
dm3.nscanPasaGene.LENGTH0.0480.0030.051
dm3.refGene.LENGTH0.0520.0040.055
dp2.genscan.LENGTH0.0290.0000.028
dp2.xenoRefGene.LENGTH0.2050.0000.205
dp3.geneid.LENGTH0.0420.0000.042
dp3.genscan.LENGTH0.0210.0040.025
dp3.xenoRefGene.LENGTH0.1120.0000.113
droAna1.geneid.LENGTH0.0750.0000.076
droAna1.genscan.LENGTH0.0200.0000.019
droAna1.xenoRefGene.LENGTH0.2090.0000.209
droAna2.genscan.LENGTH0.2270.0040.230
droAna2.xenoRefGene.LENGTH0.2340.0000.234
droEre1.genscan.LENGTH0.0240.0000.023
droEre1.xenoRefGene.LENGTH0.2250.0000.225
droGri1.genscan.LENGTH0.0320.0000.033
droGri1.xenoRefGene.LENGTH0.2450.0000.244
droMoj1.geneid.LENGTH0.1050.0040.108
droMoj1.genscan.LENGTH0.0410.0040.045
droMoj1.xenoRefGene.LENGTH0.1900.0000.191
droMoj2.genscan.LENGTH0.0300.0000.031
droMoj2.xenoRefGene.LENGTH0.2190.0000.220
droPer1.genscan.LENGTH0.0310.0000.032
droPer1.xenoRefGene.LENGTH0.2200.0040.223
droSec1.genscan.LENGTH0.0190.0040.023
droSec1.xenoRefGene.LENGTH0.2190.0000.219
droSim1.geneid.LENGTH0.0320.0000.033
droSim1.genscan.LENGTH0.0170.0040.021
droSim1.xenoRefGene.LENGTH0.1890.0000.188
droVir1.geneid.LENGTH0.0890.0000.089
droVir1.genscan.LENGTH0.0340.0000.035
droVir1.xenoRefGene.LENGTH0.1810.0000.180
droVir2.genscan.LENGTH0.0280.0000.028
droVir2.xenoRefGene.LENGTH0.2140.0000.215
droYak1.geneid.LENGTH0.0360.0000.035
droYak1.genscan.LENGTH0.0240.0000.024
droYak1.xenoRefGene.LENGTH0.2230.0120.234
droYak2.genscan.LENGTH0.0240.0000.023
droYak2.xenoRefGene.LENGTH0.2110.0000.211
equCab1.geneSymbol.LENGTH0.0050.0000.004
equCab1.geneid.LENGTH0.0730.0000.073
equCab1.nscanGene.LENGTH0.0330.0000.033
equCab1.refGene.LENGTH0.0040.0000.004
equCab1.sgpGene.LENGTH0.0570.0000.057
equCab2.ensGene.LENGTH0.0810.0000.081
equCab2.geneSymbol.LENGTH0.0060.0000.005
equCab2.nscanGene.LENGTH0.0440.0000.044
equCab2.refGene.LENGTH0.0050.0000.006
equCab2.xenoRefGene.LENGTH0.4580.0000.458
felCat3.ensGene.LENGTH0.0800.0040.083
felCat3.geneSymbol.LENGTH0.0000.0030.003
felCat3.geneid.LENGTH0.4620.0050.466
felCat3.genscan.LENGTH0.1060.0000.105
felCat3.nscanGene.LENGTH0.0870.0000.087
felCat3.refGene.LENGTH0.0040.0000.003
felCat3.sgpGene.LENGTH0.1230.0000.123
felCat3.xenoRefGene.LENGTH1.1390.0041.143
fr1.ensGene.LENGTH0.0640.0000.064
fr1.genscan.LENGTH0.050.000.05
fr2.ensGene.LENGTH0.1110.0000.111
galGal2.ensGene.LENGTH0.0490.0000.048
galGal2.geneSymbol.LENGTH0.0140.0000.014
galGal2.geneid.LENGTH0.0330.0000.032
galGal2.genscan.LENGTH0.0450.0000.045
galGal2.refGene.LENGTH0.0140.0000.014
galGal2.sgpGene.LENGTH0.0390.0000.038
galGal3.ensGene.LENGTH0.0630.0000.063
galGal3.geneSymbol.LENGTH0.0130.0000.014
galGal3.genscan.LENGTH0.0430.0000.042
galGal3.nscanGene.LENGTH0.0630.0000.063
galGal3.refGene.LENGTH0.0120.0000.012
galGal3.xenoRefGene.LENGTH1.3530.0161.370
gasAcu1.ensGene.LENGTH0.0770.0040.081
gasAcu1.nscanGene.LENGTH0.0710.0000.071
hg16.acembly.LENGTH0.3090.0080.318
hg16.ensGene.LENGTH0.0550.0000.056
hg16.exoniphy.LENGTH0.1880.0080.195
hg16.geneSymbol.LENGTH0.0920.0040.095
hg16.geneid.LENGTH0.0390.0000.039
hg16.genscan.LENGTH0.0590.0000.059
hg16.knownGene.LENGTH0.0980.0000.098
hg16.refGene.LENGTH0.0860.0000.086
hg16.sgpGene.LENGTH0.0450.0000.045
hg17.acembly.LENGTH0.3900.0120.402
hg17.acescan.LENGTH0.0080.0000.009
hg17.ccdsGene.LENGTH0.0190.0000.020
hg17.ensGene.LENGTH0.0930.0000.094
hg17.exoniphy.LENGTH0.3480.0040.352
hg17.geneSymbol.LENGTH0.0850.0000.086
hg17.geneid.LENGTH0.0620.0000.061
hg17.genscan.LENGTH0.0470.0000.047
hg17.knownGene.LENGTH0.0850.0040.089
hg17.refGene.LENGTH0.0760.0000.076
hg17.sgpGene.LENGTH0.0560.0000.057
hg17.vegaGene.LENGTH0.0340.0000.033
hg17.vegaPseudoGene.LENGTH0.0140.0000.014
hg17.xenoRefGene.LENGTH0.1670.0040.171
hg18.acembly.LENGTH0.4120.0000.412
hg18.acescan.LENGTH0.0090.0000.009
hg18.ccdsGene.LENGTH0.0290.0000.029
hg18.ensGene.LENGTH0.1670.0000.167
hg18.exoniphy.LENGTH0.3770.0040.381
hg18.geneSymbol.LENGTH0.0860.0040.090
hg18.geneid.LENGTH0.0620.0000.062
hg18.genscan.LENGTH0.0510.0000.051
hg18.knownGene.LENGTH0.1400.0000.141
hg18.knownGeneOld3.LENGTH0.060.000.06
hg18.refGene.LENGTH0.0900.0000.089
hg18.sgpGene.LENGTH0.0640.0040.067
hg18.sibGene.LENGTH0.7190.0200.739
hg18.xenoRefGene.LENGTH0.2870.0000.287
hg19.ccdsGene.LENGTH0.0350.0000.035
hg19.ensGene.LENGTH0.2710.0000.272
hg19.exoniphy.LENGTH0.3670.0000.367
hg19.geneSymbol.LENGTH0.0840.0000.084
hg19.knownGene.LENGTH0.1560.0000.156
hg19.nscanGene.LENGTH0.1290.0000.130
hg19.refGene.LENGTH0.0830.0000.084
hg19.xenoRefGene.LENGTH0.2870.0000.287
loxAfr3.xenoRefGene.LENGTH0.6350.0000.635
mm7.ensGene.LENGTH0.0940.0000.094
mm7.geneSymbol.LENGTH0.0720.0040.076
mm7.geneid.LENGTH0.0720.0000.072
mm7.genscan.LENGTH0.0540.0000.054
mm7.knownGene.LENGTH0.080.000.08
mm7.refGene.LENGTH0.0720.0000.072
mm7.sgpGene.LENGTH0.0650.0000.066
mm7.xenoRefGene.LENGTH0.2600.0000.261
mm8.ccdsGene.LENGTH0.020.000.02
mm8.ensGene.LENGTH0.0660.0040.071
mm8.geneSymbol.LENGTH0.0780.0000.079
mm8.geneid.LENGTH0.0670.0040.071
mm8.genscan.LENGTH0.0520.0040.055
mm8.knownGene.LENGTH0.0830.0000.082
mm8.nscanGene.LENGTH0.0570.0040.061
mm8.refGene.LENGTH0.0710.0000.070
mm8.sgpGene.LENGTH0.0680.0000.068
mm8.sibGene.LENGTH0.3590.0160.375
mm8.xenoRefGene.LENGTH0.2920.0000.292
mm9.acembly.LENGTH0.2990.0000.299
mm9.ccdsGene.LENGTH0.0260.0000.026
mm9.ensGene.LENGTH0.1350.0040.140
mm9.exoniphy.LENGTH0.3940.0000.395
mm9.geneSymbol.LENGTH0.0790.0000.079
mm9.geneid.LENGTH0.0790.0000.079
mm9.genscan.LENGTH0.0520.0040.056
mm9.knownGene.LENGTH0.0990.0000.098
mm9.nscanGene.LENGTH0.0560.0000.056
mm9.refGene.LENGTH0.070.000.07
mm9.sgpGene.LENGTH0.070.000.07
mm9.xenoRefGene.LENGTH0.3040.0000.304
monDom1.genscan.LENGTH0.0550.0040.059
monDom4.ensGene.LENGTH0.0640.0000.064
monDom4.geneSymbol.LENGTH0.0030.0000.003
monDom4.genscan.LENGTH0.0460.0000.046
monDom4.nscanGene.LENGTH0.0460.0000.046
monDom4.refGene.LENGTH0.0000.0030.003
monDom4.xenoRefGene.LENGTH0.2950.0010.296
monDom5.ensGene.LENGTH0.0870.0000.087
monDom5.geneSymbol.LENGTH0.0030.0000.002
monDom5.genscan.LENGTH0.0450.0000.045
monDom5.nscanGene.LENGTH0.1000.0040.103
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.7530.0040.757
ornAna1.ensGene.LENGTH0.080.000.08
ornAna1.geneSymbol.LENGTH0.0020.0000.002
ornAna1.refGene.LENGTH0.0010.0000.002
ornAna1.xenoRefGene.LENGTH0.4700.0000.471
oryLat2.ensGene.LENGTH0.0690.0000.069
oryLat2.geneSymbol.LENGTH0.0040.0000.003
oryLat2.refGene.LENGTH0.0040.0000.003
oryLat2.xenoRefGene.LENGTH0.4230.0040.427
panTro1.ensGene.LENGTH0.0910.0000.091
panTro1.geneid.LENGTH0.0440.0000.044
panTro1.genscan.LENGTH0.0530.0000.053
panTro1.xenoRefGene.LENGTH0.0920.0000.093
panTro2.ensGene.LENGTH0.1000.0000.101
panTro2.geneSymbol.LENGTH0.0850.0000.085
panTro2.genscan.LENGTH0.0540.0000.054
panTro2.nscanGene.LENGTH0.0650.0000.065
panTro2.refGene.LENGTH0.0970.0000.098
panTro2.xenoRefGene.LENGTH1.1110.0001.112
petMar1.xenoRefGene.LENGTH0.2000.0000.201
ponAbe2.ensGene.LENGTH0.0670.0000.067
ponAbe2.geneSymbol.LENGTH0.0090.0000.009
ponAbe2.genscan.LENGTH0.0510.0000.051
ponAbe2.nscanGene.LENGTH0.0520.0000.052
ponAbe2.refGene.LENGTH0.010.000.01
ponAbe2.xenoRefGene.LENGTH0.5020.0040.505
priPac1.xenoRefGene.LENGTH0.3150.0040.319
rheMac2.ensGene.LENGTH0.1090.0040.113
rheMac2.geneSymbol.LENGTH0.0040.0000.004
rheMac2.geneid.LENGTH0.0660.0030.070
rheMac2.nscanGene.LENGTH0.0520.0000.052
rheMac2.refGene.LENGTH0.0040.0000.004
rheMac2.sgpGene.LENGTH0.0600.0000.061
rheMac2.xenoRefGene.LENGTH0.3710.0000.371
rn3.ensGene.LENGTH0.0870.0000.086
rn3.geneSymbol.LENGTH0.0420.0000.041
rn3.geneid.LENGTH0.0430.0000.043
rn3.genscan.LENGTH0.0530.0000.053
rn3.knownGene.LENGTH0.0190.0000.019
rn3.nscanGene.LENGTH0.0490.0000.048
rn3.refGene.LENGTH0.0380.0000.038
rn3.sgpGene.LENGTH0.0480.0000.049
rn3.xenoRefGene.LENGTH0.4510.0000.452
rn4.ensGene.LENGTH0.1080.0000.108
rn4.geneSymbol.LENGTH0.0410.0000.040
rn4.geneid.LENGTH0.0740.0000.074
rn4.genscan.LENGTH0.0510.0000.051
rn4.knownGene.LENGTH0.0190.0000.019
rn4.nscanGene.LENGTH0.0450.0000.045
rn4.refGene.LENGTH0.0370.0040.041
rn4.sgpGene.LENGTH0.0690.0000.069
rn4.xenoRefGene.LENGTH0.2640.0000.265
sacCer1.ensGene.LENGTH0.0150.0000.015
sacCer2.ensGene.LENGTH0.0100.0040.013
strPur1.geneSymbol.LENGTH0.0030.0000.004
strPur1.genscan.LENGTH0.0470.0040.051
strPur1.refGene.LENGTH0.0040.0000.004
strPur1.xenoRefGene.LENGTH0.3990.0000.398
strPur2.geneSymbol.LENGTH0.0030.0000.003
strPur2.genscan.LENGTH0.0880.0000.089
strPur2.refGene.LENGTH0.0030.0000.003
strPur2.xenoRefGene.LENGTH0.7540.0000.754
supportedGeneIDs0.1160.0282.767
supportedGenomes0.1940.0321.173
taeGut1.ensGene.LENGTH0.0620.0000.061
taeGut1.geneSymbol.LENGTH0.0030.0000.002
taeGut1.genscan.LENGTH0.0260.0040.030
taeGut1.nscanGene.LENGTH0.0230.0000.022
taeGut1.refGene.LENGTH0.0030.0000.002
taeGut1.xenoRefGene.LENGTH0.3620.0120.374
tetNig1.ensGene.LENGTH0.0870.0040.090
tetNig1.geneid.LENGTH0.0580.0000.057
tetNig1.genscan.LENGTH0.0470.0000.047
tetNig1.nscanGene.LENGTH0.0630.0000.063
tetNig2.ensGene.LENGTH0.0630.0000.062
unfactor0.0030.0000.003
xenTro1.genscan.LENGTH0.0740.0000.074
xenTro2.ensGene.LENGTH0.0700.0040.075
xenTro2.geneSymbol.LENGTH0.0270.0000.026
xenTro2.genscan.LENGTH0.0590.0000.059
xenTro2.refGene.LENGTH0.0250.0000.026