Back to Build/check report for BioC 3.16 experimental data
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for RNAmodR.Data on nebbiolo2


To the developers/maintainers of the RNAmodR.Data package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 317/416HostnameOS / ArchINSTALLBUILDCHECK
RNAmodR.Data 1.12.0  (landing page)
Felix G.M. Ernst
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/RNAmodR.Data
git_branch: RELEASE_3_16
git_last_commit: 276bc1e
git_last_commit_date: 2022-11-01 11:21:49 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  ERROR    OK    ERROR  

Summary

Package: RNAmodR.Data
Version: 1.12.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RNAmodR.Data.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings RNAmodR.Data_1.12.0.tar.gz
StartedAt: 2023-04-11 12:12:53 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 12:12:58 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 5.3 seconds
RetCode: 1
Status:   ERROR  
CheckDir: RNAmodR.Data.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:RNAmodR.Data.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings RNAmodR.Data_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RNAmodR.Data.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘RNAmodR.Data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RNAmodR.Data’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAmodR.Data’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RNAmodR.Data.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/RNAmodR.Data.Rcheck/00check.log’
for details.


Installation output

RNAmodR.Data.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL RNAmodR.Data
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘RNAmodR.Data’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2022-10-31
Error: package or namespace load failed for ‘RNAmodR.Data’:
 .onLoad failed in loadNamespace() for 'RNAmodR.Data', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'x' in selecting a method for function 'query': error reading from connection
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/biocbuild/bbs-3.16-bioc/R/site-library/RNAmodR.Data’
* restoring previous ‘/home/biocbuild/bbs-3.16-bioc/R/site-library/RNAmodR.Data’

Tests output


Example timings