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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MetaGxOvarian on nebbiolo2


To the developers/maintainers of the MetaGxOvarian package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 224/416HostnameOS / ArchINSTALLBUILDCHECK
MetaGxOvarian 1.18.0  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/MetaGxOvarian
git_branch: RELEASE_3_16
git_last_commit: a29eb47
git_last_commit_date: 2022-11-01 11:18:17 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: MetaGxOvarian
Version: 1.18.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:MetaGxOvarian.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings MetaGxOvarian_1.18.0.tar.gz
StartedAt: 2023-04-11 11:59:07 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 12:03:52 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 284.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: MetaGxOvarian.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:MetaGxOvarian.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings MetaGxOvarian_1.18.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/MetaGxOvarian.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘MetaGxOvarian/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MetaGxOvarian’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetaGxOvarian’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
loadOvarianEsets    32.118  2.236  37.247
loadOvarianDatasets 28.775  1.856  33.501
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘required.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘MetaGxOvarian.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
* checking PDF version of manual without index ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/MetaGxOvarian.Rcheck/00check.log’
for details.



Installation output

MetaGxOvarian.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL MetaGxOvarian
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘MetaGxOvarian’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MetaGxOvarian)

Tests output

MetaGxOvarian.Rcheck/tests/required.Rout


R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> #
> 
> proc.time()
   user  system elapsed 
  0.107   0.052   0.146 

Example timings

MetaGxOvarian.Rcheck/MetaGxOvarian-Ex.timings

nameusersystemelapsed
loadOvarianDatasets28.775 1.85633.501
loadOvarianEsets32.118 2.23637.247