############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL vsclust ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘vsclust’ ... ** using staged installation ** libs g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -c vsclust_algo.cpp -o vsclust_algo.o vsclust_algo.cpp: In function ‘void object_memberships(const NumericMatrix&, int, const NumericVector&, int, Rcpp::NumericMatrix&)’: vsclust_algo.cpp:115:12: warning: unused variable ‘epsilon’ [-Wunused-variable] 115 | double epsilon = 0.00001; | ^~~~~~~ vsclust_algo.cpp: In function ‘double c_plusplus_means(const NumericMatrix&, Rcpp::NumericMatrix&, Rcpp::NumericVector&, Rcpp::NumericVector&, int, int, double, int, Rcpp::NumericMatrix&, double, Rcpp::IntegerVector&, double, double)’: vsclust_algo.cpp:371:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 371 | if(verbose) | ^~ vsclust_algo.cpp:374:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 374 | ermin = new_fitness; | ^~~~~ g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o vsclust.so RcppExports.o vsclust_algo.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-vsclust/00new/vsclust/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vsclust)