############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition ### ############################################################################## ############################################################################## * checking for file ‘variancePartition/DESCRIPTION’ ... OK * preparing ‘variancePartition’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: variancePartition * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘FAQ.Rmd’ using rmarkdown --- finished re-building ‘FAQ.Rmd’ --- re-building ‘additional_visualization.Rmd’ using rmarkdown Loading required package: ggplot2 Loading required package: limma Loading required package: BiocParallel Memory usage to store result: >90.9 Kb Dividing work into 1 chunks... Total:0.2 s --- finished re-building ‘additional_visualization.Rmd’ --- re-building ‘dream.Rmd’ using rmarkdown Quitting from lines 89-103 (dream.Rmd) Error: processing vignette 'dream.Rmd' failed with diagnostics: there is no package called 'edgeR' --- failed re-building ‘dream.Rmd’ --- re-building ‘theory_practice_random_effects.Rmd’ using rmarkdown Loading required package: Matrix --- finished re-building ‘theory_practice_random_effects.Rmd’ --- re-building ‘variancePartition.Rnw’ using knitr Dividing work into 10 chunks... Total:10 s Dividing work into 10 chunks... Total:10 s Memory usage to store result: >9.9 Mb Dividing work into 10 chunks... Total:8 s Memory usage to store result: >6.3 Mb Dividing work into 10 chunks... Total:11 s Dividing work into 10 chunks... Total:10 s Dividing work into 10 chunks... Total:7 s Memory usage to store result: >6.9 Mb Dividing work into 10 chunks... Total:4 s Dividing work into 10 chunks... Total:8 s Memory usage to store result: >1.4 Mb Dividing work into 10 chunks... Total:4 s Dividing work into 10 chunks... Total:14 s Memory usage to store result: >191.8 Kb Dividing work into 1 chunks... Total:0.2 s Dividing work into 1 chunks... Total:0.2 s Dividing work into 10 chunks... Total:12 s Quitting from lines 549-578 (variancePartition.Rnw) Error: processing vignette 'variancePartition.Rnw' failed with diagnostics: there is no package called 'edgeR' --- failed re-building ‘variancePartition.Rnw’ SUMMARY: processing the following files failed: ‘dream.Rmd’ ‘variancePartition.Rnw’ Error: Vignette re-building failed. Execution halted