############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data timeOmics ### ############################################################################## ############################################################################## * checking for file ‘timeOmics/DESCRIPTION’ ... OK * preparing ‘timeOmics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rmd’ using rmarkdown Loading required package: mixOmics Loading required package: MASS Loading required package: lattice Loading required package: ggplot2 Loaded mixOmics 6.21.0 Thank you for using mixOmics! Tutorials: http://mixomics.org Bookdown vignette: https://mixomicsteam.github.io/Bookdown Questions, issues: Follow the prompts at http://mixomics.org/contact-us Cite us: citation('mixOmics') ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ── ✔ tibble 3.1.7 ✔ dplyr 1.0.9 ✔ tidyr 1.2.0 ✔ stringr 1.4.0 ✔ readr 2.1.2 ✔ forcats 0.5.1 ✔ purrr 0.3.4 ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ── ✖ dplyr::filter() masks stats::filter() ✖ dplyr::lag() masks stats::lag() ✖ purrr::map() masks mixOmics::map() ✖ dplyr::select() masks MASS::select() Warning: Removed 3 row(s) containing missing values (geom_path). Warning: Removed 3 rows containing missing values (geom_point). Quitting from lines 532-541 (vignette.Rmd) Error: processing vignette 'vignette.Rmd' failed with diagnostics: length(class2) == 1L is not TRUE --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted