############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL sSNAPPY ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'sSNAPPY' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GenePertScore.cpp -o GenePertScore.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo:26, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from GenePertScore.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c code.cpp -o code.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c normaliseByPermutation.cpp -o normaliseByPermutation.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo:26, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from normaliseByPermutation.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ g++ -shared -s -static-libgcc -o sSNAPPY.dll tmp.def GenePertScore.o RcppExports.o code.o normaliseByPermutation.o -fopenmp -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-sSNAPPY/00new/sSNAPPY/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sSNAPPY)