Mike Smith
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/rhdf5 |
| git_branch: RELEASE_3_16 |
| git_last_commit: 8df5fc7 |
| git_last_commit_date: 2023-04-07 03:31:36 -0400 (Fri, 07 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:48 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rhdf5 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1670/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5 2.42.1 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rhdf5 |
| Version: 2.42.1 |
| Command: rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5.buildbin-libdir rhdf5_2.42.1.tar.gz |
| StartedAt: 2023-04-11 08:38:29 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:39:04 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 35.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rhdf5_2.42.1.zip |
| PackageFileSize: 4.269 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5.buildbin-libdir rhdf5_2.42.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'rhdf5' ... ** using staged installation ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5R.c -o H5R.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S_extras.c -o H5S_extras.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bit64conversion.c -o bit64conversion.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o g++ -std=gnu++14 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5R.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LF:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'rhdf5' as rhdf5_2.42.1.zip * DONE (rhdf5)