############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data metabolomicsWorkbenchR ### ############################################################################## ############################################################################## * checking for file ‘metabolomicsWorkbenchR/DESCRIPTION’ ... OK * preparing ‘metabolomicsWorkbenchR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction_to_metabolomicsWorkbenchR.Rmd’ using rmarkdown --- finished re-building ‘Introduction_to_metabolomicsWorkbenchR.Rmd’ --- re-building ‘example_using_structToolbox.Rmd’ using rmarkdown Quitting from lines 125-143 (example_using_structToolbox.Rmd) Error: processing vignette 'example_using_structToolbox.Rmd' failed with diagnostics: invalid class "mv_feature_filter" object: The required package "pmp" is not installed. --- failed re-building ‘example_using_structToolbox.Rmd’ SUMMARY: processing the following file failed: ‘example_using_structToolbox.Rmd’ Error: Vignette re-building failed. Execution halted