############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL mbkmeans ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'mbkmeans' ... ** using staged installation ** libs g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/ClusterR/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/ClusterR/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo:26, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from mini_batch.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ In file included from mini_batch.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable >, int)': F:/biocbuild/bbs-3.16-bioc/R/library/ClusterR/include/ClusterRHeader.h:926:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] 926 | bool status; | ^~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::string, std::string, int, int, bool, double, int)': F:/biocbuild/bbs-3.16-bioc/R/library/ClusterR/include/ClusterRHeader.h:1601:14: warning: variable 'status' set but not used [-Wunused-but-set-variable] 1601 | bool status; | ^~~~~~ g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-mbkmeans/00new/mbkmeans/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mbkmeans)