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This page was generated on 2023-04-12 11:05:37 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for iCheck on palomino4


To the developers/maintainers of the iCheck package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCheck.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 945/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCheck 1.28.0  (landing page)
Weiliang Qiu
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/iCheck
git_branch: RELEASE_3_16
git_last_commit: 2b0b9cf
git_last_commit_date: 2022-11-01 11:12:18 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.5.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: iCheck
Version: 1.28.0
Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:iCheck.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings iCheck_1.28.0.tar.gz
StartedAt: 2023-04-11 02:25:42 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 02:30:40 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 298.6 seconds
RetCode: 0
Status:   OK  
CheckDir: iCheck.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:iCheck.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings iCheck_1.28.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/iCheck.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'iCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'iCheck' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'iCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

iCheck.Rcheck/00install.out

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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL iCheck
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
* installing *source* package 'iCheck' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package keeps a record of temporary installation path
* DONE (iCheck)

Tests output


Example timings

iCheck.Rcheck/iCheck-Ex.timings

nameusersystemelapsed
LumiBatch2Table0.100.020.11
R2PlotFunc0.190.000.19
boxPlots0.160.010.17
densityPlots1.060.041.09
genSimData.BayesNormal0.020.010.03
getPCAFunc0.040.000.05
glmWrapper0.270.030.30
lkhrWrapper0.370.100.47
lmFitPaired0.030.010.04
lmFitWrapper0.050.000.05
pca2DPlot0.060.020.08
pca3DPlot0.070.000.06
plotCurves0.040.010.06
plotQCCurves0.050.020.07
plotSamplep95p050.060.000.06
quantilePlot0.030.050.08
scatterPlots0.130.000.12
sortExpressionSet0.060.000.06