############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL h5vc ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘h5vc’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bam.c -o bam.o ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: In file included from ./bam.c:1: ./bam.c:1:10: error: 'bam.c' file not found with include; use "quotes" instead #include ^~~~~~~ "bam.c" fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [bam.o] Error 1 ERROR: compilation failed for package ‘h5vc’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/h5vc’