############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data glmSparseNet ### ############################################################################## ############################################################################## * checking for file ‘glmSparseNet/DESCRIPTION’ ... OK * preparing ‘glmSparseNet’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘example_brca_logistic.Rmd’ using rmarkdown Quitting from lines 54-57 (example_brca_logistic.Rmd) Error: processing vignette 'example_brca_logistic.Rmd' failed with diagnostics: different row counts implied by arguments --- failed re-building ‘example_brca_logistic.Rmd’ --- re-building ‘example_brca_protein-protein-interactions_survival.Rmd’ using rmarkdown Quitting from lines 135-138 (example_brca_protein-protein-interactions_survival.Rmd) Error: processing vignette 'example_brca_protein-protein-interactions_survival.Rmd' failed with diagnostics: different row counts implied by arguments --- failed re-building ‘example_brca_protein-protein-interactions_survival.Rmd’ --- re-building ‘example_brca_survival.Rmd’ using rmarkdown Quitting from lines 54-57 (example_brca_survival.Rmd) Error: processing vignette 'example_brca_survival.Rmd' failed with diagnostics: different row counts implied by arguments --- failed re-building ‘example_brca_survival.Rmd’ --- re-building ‘example_prad_survival.Rmd’ using rmarkdown --- finished re-building ‘example_prad_survival.Rmd’ --- re-building ‘example_skcm_survival.Rmd’ using rmarkdown --- finished re-building ‘example_skcm_survival.Rmd’ --- re-building ‘separate2GroupsCox.Rmd’ using rmarkdown --- finished re-building ‘separate2GroupsCox.Rmd’ SUMMARY: processing the following files failed: ‘example_brca_logistic.Rmd’ ‘example_brca_protein-protein-interactions_survival.Rmd’ ‘example_brca_survival.Rmd’ Error: Vignette re-building failed. Execution halted