############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=flowPeaks.buildbin-libdir flowPeaks_1.44.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'flowPeaks' ... ** using staged installation ** libs rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o "F:/biocbuild/bbs-3.16-bioc/R/bin/x64/Rscript.exe" "../tools/winlibs.R" 2.4 g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rpack.cpp -o Rpack.o Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)': Rpack.cpp:141:18: warning: comparison of integer expressions of different signedness: 'std::map::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 141 | if(levels.size()<(i+1)){ | ~~~~~~~~~~~~~^~~~~~ g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rregistrate.cpp -o Rregistrate.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o VoronoiDiagramGenerator.cpp: In member function 'void VoronoiDiagramGenerator::out_site(Site*)': VoronoiDiagramGenerator.cpp:803:5: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] 803 | if(!triangulate & plot & !debug) | ^~~~~~~~~~~~ g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowPeaks.cpp -o flowPeaks.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect.cpp -o func_collect.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c func_collect_supp.cpp -o func_collect_supp.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gvector_gmatrix.cpp -o gvector_gmatrix.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kd_tree.cpp -o kd_tree.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kmns.cpp -o kmns.o g++ -std=gnu++14 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/meat/flowPeaks.buildbin-libdir/00LOCK-flowPeaks/00new/flowPeaks/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'flowPeaks' as flowPeaks_1.44.0.zip * DONE (flowPeaks)