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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL TraRe
###
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘TraRe’ ...
** using staged installation
** libs
gcc -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o TraRe.so RegisterDynamicSymbol.o vbsr.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
/usr/bin/ld: RegisterDynamicSymbol.o:RegisterDynamicSymbol.c:(.text+0x1a): undefined reference to `R_registerRoutines'
/usr/bin/ld: RegisterDynamicSymbol.o:RegisterDynamicSymbol.c:(.text+0x2c): undefined reference to `R_useDynamicSymbols'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xa5): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xb3): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xc2): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xd3): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xe4): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xf5): more undefined references to `malloc' follow
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2e8): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2fd): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x312): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x327): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x33c): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x351): more undefined references to `free' follow
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x40a): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x456): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x47f): undefined reference to `dnrm2_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x4b9): undefined reference to `dscal_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x52c): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x565): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x57f): undefined reference to `dnrm2_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x5ba): undefined reference to `dscal_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x5e1): undefined reference to `sqrt'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x661): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x68b): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x6d7): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x6f1): undefined reference to `dnrm2_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x724): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x73e): undefined reference to `dnrm2_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x765): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x7a1): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x7ce): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x829): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x8c5): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x9c6): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xab0): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xac3): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xb25): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xb38): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xc2c): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0xc69): more undefined references to `malloc' follow
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1302): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1312): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1330): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1343): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1395): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x13a6): more undefined references to `free' follow
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x17da): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x181c): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1893): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x18ac): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x192e): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1984): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1a70): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1a91): undefined reference to `exp'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1ae1): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1af6): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1b79): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1b8e): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1ba7): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1c94): more undefined references to `log' follow
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1d53): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1e0b): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1e7b): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1e9c): undefined reference to `exp'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1eef): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1f04): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1f7e): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1f93): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x1fac): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2004): undefined reference to `sqrt'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2024): undefined reference to `sqrt'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x214b): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2182): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x21de): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2228): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2312): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x238b): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x23e2): undefined reference to `sqrt'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x23f1): undefined reference to `sqrt'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2493): undefined reference to `exp'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x258e): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x25b4): undefined reference to `R_finite'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x25d0): undefined reference to `Rf_error'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x25e4): undefined reference to `Rf_error'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2663): undefined reference to `exp'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2746): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x275f): undefined reference to `R_finite'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x276f): undefined reference to `Rf_error'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x277b): undefined reference to `Rf_error'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2816): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x285f): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2872): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2896): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2905): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2914): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x295d): more undefined references to `log' follow
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x29dd): undefined reference to `ddot_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2a15): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2a49): undefined reference to `log'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2bdd): undefined reference to `Rprintf'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2ca5): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2e9c): undefined reference to `Rf_warning'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2edf): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x30f9): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x314d): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x31e2): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3237): undefined reference to `daxpy_'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x337e): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3389): undefined reference to `malloc'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3566): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x36ba): undefined reference to `exp'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x36e9): undefined reference to `exp'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x375f): undefined reference to `Rprintf'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3933): undefined reference to `sqrt'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x3d9): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x13e9): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x14aa): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x2ed5): undefined reference to `free'
/usr/bin/ld: vbsr.o:vbsr.c:(.text+0x35d5): undefined reference to `free'
collect2: error: ld returned 1 exit status
make: *** [/home/biocbuild/bbs-3.16-bioc/R/share/make/shlib.mk:10: TraRe.so] Error 1
ERROR: compilation failed for package ‘TraRe’
* removing ‘/home/biocbuild/bbs-3.16-bioc/R/site-library/TraRe’