############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf TraRe.buildbin-libdir && mkdir TraRe.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TraRe_1.6.3.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TraRe.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TraRe.buildbin-libdir TraRe_1.6.3.tar.gz' >>>>>>> * installing *source* package ‘TraRe’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c RegisterDynamicSymbol.c -o RegisterDynamicSymbol.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c vbsr.c -o vbsr.o vbsr.c:337:34: warning: implicit conversion from enumeration type 'bmaType' to different enumeration type 'errorType' [-Wenum-conversion] model->control_param.errType = EXACT; ~ ^~~~~ 1 warning generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TraRe.so RegisterDynamicSymbol.o vbsr.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/TraRe.buildbin-libdir/00LOCK-TraRe/00new/TraRe/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'TraRe' is deprecated and will be removed from Bioconductor version 3.17 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: Package 'TraRe' is deprecated and will be removed from Bioconductor version 3.17 ** testing if installed package keeps a record of temporary installation path * DONE (TraRe) >>>>>>> >>>>>>> FIXING LINKS FOR TraRe.buildbin-libdir/TraRe/libs/TraRe.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "TraRe.buildbin-libdir/TraRe/libs/TraRe.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "TraRe.buildbin-libdir/TraRe/libs/TraRe.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "TraRe.buildbin-libdir/TraRe/libs/TraRe.so"