############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL SingleR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'SingleR' ... ** using staged installation ** libs g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c find_classic_markers.cpp -o find_classic_markers.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:19, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 220 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 234 | #pragma omp for schedule(static) | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 267 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 278 | #pragma omp for schedule(static) | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 163 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 77 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 49 | #pragma omp parallel for | F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | #pragma omp parallel for | In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::fill_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 30 | if (i != best_label && next_score < val) { | ~~^~~~~~~~~~~~~ ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::replace_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 56 | if (i != best_index && next_score < val) { | ~~^~~~~~~~~~~~~ In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8, from ../inst/include/singlepp/singlepp.hpp:12, from utils.h:24, from find_classic_markers.cpp:2: ../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector singlepp::IntegratedBuilder::finish()': ../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 438 | if (it->second < first) { | ~~~~~~~~~~~^~~~~~~ ../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 441 | if (it->second > last) { | ~~~~~~~~~~~^~~~~~ find_classic_markers.cpp: In function 'Rcpp::List find_classic_markers(int, int, Rcpp::List, Rcpp::List, int, int)': find_classic_markers.cpp:13:14: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 13 | if (nref != labels.size()) { | ~~~~~^~~~~~~~~~~~~~~~ find_classic_markers.cpp:28:43: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 28 | if (ref_vec.back().matrix->nrow() != ngenes) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ find_classic_markers.cpp:34:35: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 34 | if (lab_vec.back().size() != ref_vec.back().matrix->ncol()) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]': ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 116 | for (INDEX_t i = 1; i < ncenters; ++i) { | ~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 133 | for (INDEX_t c = 0; c < ncenters; ++c) { | ~~^~~~~~~~~~ In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: ../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair singlepp::FineTuner::run(singlepp::RankedVector&, const std::vector&, const Markers&, std::vector&, double, double) [with bool test = false; singlepp::RankedVector = std::vector, std::allocator > >; singlepp::Markers = std::vector > >]': ../inst/include/singlepp/annotate_cells.hpp:120:86: required from here ../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable] 136 | size_t NR = curref.index->ndim(); | ^~ In file included from ../inst/include/singlepp/singlepp.hpp:15, from utils.h:24, from find_classic_markers.cpp:2: ../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; singlepp::Markers = std::vector > >; std::size_t = long long unsigned int]': ../inst/include/singlepp/load_references.hpp:598:60: required from here ../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable] 490 | bool continuing = false; | ^~~~~~~~~~ In file included from ../inst/include/singlepp/singlepp.hpp:14, from utils.h:24, from find_classic_markers.cpp:2: ../inst/include/singlepp/ChooseClassicMarkers.hpp: In instantiation of 'singlepp::Markers singlepp::ChooseClassicMarkers::run(const std::vector&, const std::vector&) const [with Matrix = tatami::Matrix; Label = int; singlepp::Markers = std::vector > >]': find_classic_markers.cpp:42:44: required from here ../inst/include/singlepp/ChooseClassicMarkers.hpp:197:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 197 | for (int g = 0; g < ngenes; ++g, ++sIt) { | ~~^~~~~~~~ ../inst/include/singlepp/ChooseClassicMarkers.hpp:214:39: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 214 | for (int g = 0; g < ngenes; ++g, ++lptr, ++rptr, ++sIt) { | ~~^~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:11, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 19 | for (size_t s = 0; s < seeds.size(); ++s) { | ~~^~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:6, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 23 | if (nnz != val.size()) { | ~~~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable] 73 | INDEX_t counter = 0; | ^~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details kmeans::HartiganWong::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:12, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 127 | if (indices[i] == -1) { F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:7, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | if (chosen != indices.size()) { | ~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' find_classic_markers.cpp:27:68: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:12, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 187 | if (obj.size() != last - first) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 246 | if (obj.size() != nnzero) { | ~~~~~~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from find_classic_markers.cpp:2: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c integrate_build.cpp -o integrate_build.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:19, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 220 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 234 | #pragma omp for schedule(static) | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 267 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 278 | #pragma omp for schedule(static) | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 163 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 77 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 49 | #pragma omp parallel for | F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | #pragma omp parallel for | In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::fill_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 30 | if (i != best_label && next_score < val) { | ~~^~~~~~~~~~~~~ ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::replace_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 56 | if (i != best_index && next_score < val) { | ~~^~~~~~~~~~~~~ In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8, from ../inst/include/singlepp/singlepp.hpp:12, from utils.h:24, from integrate_build.cpp:3: ../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector singlepp::IntegratedBuilder::finish()': ../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 438 | if (it->second < first) { | ~~~~~~~~~~~^~~~~~~ ../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 441 | if (it->second > last) { | ~~~~~~~~~~~^~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]': ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 116 | for (INDEX_t i = 1; i < ncenters; ++i) { | ~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 133 | for (INDEX_t c = 0; c < ncenters; ++c) { | ~~^~~~~~~~~~ In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: ../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair singlepp::FineTuner::run(singlepp::RankedVector&, const std::vector&, const Markers&, std::vector&, double, double) [with bool test = false; singlepp::RankedVector = std::vector, std::allocator > >; singlepp::Markers = std::vector > >]': ../inst/include/singlepp/annotate_cells.hpp:120:86: required from here ../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable] 136 | size_t NR = curref.index->ndim(); | ^~ In file included from ../inst/include/singlepp/singlepp.hpp:15, from utils.h:24, from integrate_build.cpp:3: ../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; singlepp::Markers = std::vector > >; std::size_t = long long unsigned int]': ../inst/include/singlepp/load_references.hpp:598:60: required from here ../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable] 490 | bool continuing = false; | ^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:11, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 19 | for (size_t s = 0; s < seeds.size(); ++s) { | ~~^~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:6, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 23 | if (nnz != val.size()) { | ~~~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable] 73 | INDEX_t counter = 0; | ^~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details kmeans::HartiganWong::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:12, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 127 | if (indices[i] == -1) { F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:7, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | if (chosen != indices.size()) { | ~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_build.cpp:24:64: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:12, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 187 | if (obj.size() != last - first) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 246 | if (obj.size() != nnzero) { | ~~~~~~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_build.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c integrate_run.cpp -o integrate_run.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:19, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 220 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 234 | #pragma omp for schedule(static) | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 267 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 278 | #pragma omp for schedule(static) | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 163 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 77 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 49 | #pragma omp parallel for | F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | #pragma omp parallel for | In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::fill_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 30 | if (i != best_label && next_score < val) { | ~~^~~~~~~~~~~~~ ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::replace_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 56 | if (i != best_index && next_score < val) { | ~~^~~~~~~~~~~~~ In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8, from ../inst/include/singlepp/singlepp.hpp:12, from utils.h:24, from integrate_run.cpp:3: ../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector singlepp::IntegratedBuilder::finish()': ../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 438 | if (it->second < first) { | ~~~~~~~~~~~^~~~~~~ ../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 441 | if (it->second > last) { | ~~~~~~~~~~~^~~~~~ integrate_run.cpp: In function 'SEXPREC* integrate_run(Rcpp::RObject, Rcpp::List, SEXP, double, int)': integrate_run.cpp:18:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 18 | for (size_t r = 0; r < results.size(); ++r) { | ~~^~~~~~~~~~~~~~~~ integrate_run.cpp:24:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 24 | for (size_t r = 0; r < results.size(); ++r) { | ~~^~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]': ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 116 | for (INDEX_t i = 1; i < ncenters; ++i) { | ~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 133 | for (INDEX_t c = 0; c < ncenters; ++c) { | ~~^~~~~~~~~~ In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: ../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair singlepp::FineTuner::run(singlepp::RankedVector&, const std::vector&, const Markers&, std::vector&, double, double) [with bool test = false; singlepp::RankedVector = std::vector, std::allocator > >; singlepp::Markers = std::vector > >]': ../inst/include/singlepp/annotate_cells.hpp:120:86: required from here ../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable] 136 | size_t NR = curref.index->ndim(); | ^~ In file included from ../inst/include/singlepp/singlepp.hpp:15, from utils.h:24, from integrate_run.cpp:3: ../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; singlepp::Markers = std::vector > >; std::size_t = long long unsigned int]': ../inst/include/singlepp/load_references.hpp:598:60: required from here ../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable] 490 | bool continuing = false; | ^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:11, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 19 | for (size_t s = 0; s < seeds.size(); ++s) { | ~~^~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:6, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 23 | if (nnz != val.size()) { | ~~~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable] 73 | INDEX_t counter = 0; | ^~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details kmeans::HartiganWong::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:12, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 127 | if (indices[i] == -1) { F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:7, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | if (chosen != indices.size()) { | ~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' integrate_run.cpp:12:59: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:12, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 187 | if (obj.size() != last - first) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 246 | if (obj.size() != nnzero) { | ~~~~~~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from integrate_run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c prebuild.cpp -o prebuild.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:19, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 220 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 234 | #pragma omp for schedule(static) | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 267 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 278 | #pragma omp for schedule(static) | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 163 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 77 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 49 | #pragma omp parallel for | F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | #pragma omp parallel for | In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::fill_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 30 | if (i != best_label && next_score < val) { | ~~^~~~~~~~~~~~~ ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::replace_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 56 | if (i != best_index && next_score < val) { | ~~^~~~~~~~~~~~~ In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8, from ../inst/include/singlepp/singlepp.hpp:12, from utils.h:24, from prebuild.cpp:4: ../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector singlepp::IntegratedBuilder::finish()': ../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 438 | if (it->second < first) { | ~~~~~~~~~~~^~~~~~~ ../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 441 | if (it->second > last) { | ~~~~~~~~~~~^~~~~~ prebuild.cpp: In function 'SEXPREC* prebuild(Rcpp::RObject, Rcpp::IntegerVector, Rcpp::List, bool, int)': prebuild.cpp:24:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 24 | for (size_t m = 0; m < markers.size(); ++m) { | ~~^~~~~~~~~~~~~~~~ prebuild.cpp:29:30: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 29 | for (size_t n = 0; n < curmarkers.size(); ++n) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]': ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 116 | for (INDEX_t i = 1; i < ncenters; ++i) { | ~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 133 | for (INDEX_t c = 0; c < ncenters; ++c) { | ~~^~~~~~~~~~ In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: ../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair singlepp::FineTuner::run(singlepp::RankedVector&, const std::vector&, const Markers&, std::vector&, double, double) [with bool test = false; singlepp::RankedVector = std::vector, std::allocator > >; singlepp::Markers = std::vector > >]': ../inst/include/singlepp/annotate_cells.hpp:120:86: required from here ../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable] 136 | size_t NR = curref.index->ndim(); | ^~ In file included from ../inst/include/singlepp/singlepp.hpp:15, from utils.h:24, from prebuild.cpp:4: ../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; singlepp::Markers = std::vector > >; std::size_t = long long unsigned int]': ../inst/include/singlepp/load_references.hpp:598:60: required from here ../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable] 490 | bool continuing = false; | ^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:11, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 19 | for (size_t s = 0; s < seeds.size(); ++s) { | ~~^~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:6, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 23 | if (nnz != val.size()) { | ~~~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable] 73 | INDEX_t counter = 0; | ^~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details kmeans::HartiganWong::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:12, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 127 | if (indices[i] == -1) { F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:7, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | if (chosen != indices.size()) { | ~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' prebuild.cpp:37:57: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:12, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 187 | if (obj.size() != last - first) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 246 | if (obj.size() != nnzero) { | ~~~~~~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from prebuild.cpp:4: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I../inst/include/ -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c run.cpp -o run.o In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/sums.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:19, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:220: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 220 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:234: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 234 | #pragma omp for schedule(static) | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:267: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 267 | #pragma omp parallel | F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/stats/apply.hpp:278: warning: ignoring '#pragma omp for' [-Wunknown-pragmas] 278 | #pragma omp for schedule(static) | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:163: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 163 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:77: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 77 | #pragma omp parallel for | In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:19, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:49: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 49 | #pragma omp parallel for | F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | #pragma omp parallel for | In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::fill_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:30:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 30 | if (i != best_label && next_score < val) { | ~~^~~~~~~~~~~~~ ../inst/include/singlepp/fine_tune.hpp: In function 'std::pair singlepp::replace_labels_in_use(const std::vector&, double, std::vector&)': ../inst/include/singlepp/fine_tune.hpp:56:15: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 56 | if (i != best_index && next_score < val) { | ~~^~~~~~~~~~~~~ In file included from ../inst/include/singlepp/IntegratedScorer.hpp:8, from ../inst/include/singlepp/singlepp.hpp:12, from utils.h:24, from run.cpp:3: ../inst/include/singlepp/IntegratedBuilder.hpp: In member function 'std::vector singlepp::IntegratedBuilder::finish()': ../inst/include/singlepp/IntegratedBuilder.hpp:438:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 438 | if (it->second < first) { | ~~~~~~~~~~~^~~~~~~ ../inst/include/singlepp/IntegratedBuilder.hpp:441:36: warning: comparison of integer expressions of different signedness: 'const int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 441 | if (it->second > last) { | ~~~~~~~~~~~^~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp: In instantiation of 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]': ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:116:31: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 116 | for (INDEX_t i = 1; i < ncenters; ++i) { | ~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:133:35: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 133 | for (INDEX_t c = 0; c < ncenters; ++c) { | ~~^~~~~~~~~~ In file included from ../inst/include/singlepp/annotate_cells.hpp:9, from ../inst/include/singlepp/BasicScorer.hpp:5, from ../inst/include/singlepp/Classifier.hpp:6, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: ../inst/include/singlepp/fine_tune.hpp: In instantiation of 'std::pair singlepp::FineTuner::run(singlepp::RankedVector&, const std::vector&, const Markers&, std::vector&, double, double) [with bool test = false; singlepp::RankedVector = std::vector, std::allocator > >; singlepp::Markers = std::vector > >]': ../inst/include/singlepp/annotate_cells.hpp:120:86: required from here ../inst/include/singlepp/fine_tune.hpp:136:24: warning: unused variable 'NR' [-Wunused-variable] 136 | size_t NR = curref.index->ndim(); | ^~ In file included from ../inst/include/singlepp/singlepp.hpp:15, from utils.h:24, from run.cpp:3: ../inst/include/singlepp/load_references.hpp: In instantiation of 'singlepp::Markers singlepp::load_markers_internal(std::size_t, std::size_t, Reader&) [with Reader = byteme::RawFileReader; singlepp::Markers = std::vector > >; std::size_t = long long unsigned int]': ../inst/include/singlepp/load_references.hpp:598:60: required from here ../inst/include/singlepp/load_references.hpp:490:10: warning: unused variable 'continuing' [-Wunused-variable] 490 | bool continuing = false; | ^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:11, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp: In instantiation of 'raticate::Parsed raticate::parse_DelayedAbind(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:76:53: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedAbind.hpp:19:26: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 19 | for (size_t s = 0; s < seeds.size(); ++s) { | ~~^~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:6, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] 23 | if (nnz != val.size()) { | ~~~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp: In instantiation of 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:119:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:23:13: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:6, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp: In instantiation of 'std::vector kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:136:25: required from 'CLUSTER_t kmeans::InitializeKmeansPP::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:91:32: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp:73:21: warning: variable 'counter' set but not used [-Wunused-but-set-variable] 73 | INDEX_t counter = 0; | ^~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:5, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:7, from F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/knncolle.hpp:8, from ../inst/include/singlepp/build_indices.hpp:8, from ../inst/include/singlepp/BasicBuilder.hpp:5, from ../inst/include/singlepp/Classifier.hpp:5, from ../inst/include/singlepp/singlepp.hpp:10, from utils.h:24, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp: In instantiation of 'void kmeans::HartiganWong::optimal_transfer(INDEX_t&) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]': F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:235:13: required from 'kmeans::Details kmeans::HartiganWong::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp:98:26: required from 'kmeans::Details kmeans::Kmeans::run(int, INDEX_t, const DATA_t*, CLUSTER_t, DATA_t*, CLUSTER_t*, kmeans::Initialize*, kmeans::Refine*) [with DATA_t = double; CLUSTER_t = int; INDEX_t = int]' F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp:106:60: required from 'knncolle::Kmknn::Kmknn(INDEX_t, INDEX_t, const INPUT_t*, double) [with INPUT_t = double; DISTANCE = knncolle::distances::Euclidean; INDEX_t = int; DISTANCE_t = double; QUERY_t = double; INTERNAL_t = double]' ../inst/include/singlepp/BasicBuilder.hpp:103:127: required from here F:/biocbuild/bbs-3.16-bioc/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp:344:41: warning: suggest parentheses around '&&' within '||' [-Wparentheses] 344 | if (obs >= live[l1] && obs >= live[cen] || cen == l1 || cen == ll) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:12, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:113:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 127 | if (indices[i] == -1) { F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp: In instantiation of 'std::vector tatami::compress_sparse_triplets(std::size_t, std::size_t, U&, V&, W&) [with bool ROW = false; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:88:56: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<13>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SparseArraySeed.hpp:116:52: required from 'raticate::Parsed raticate::parse_SparseArraySeed(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:61:56: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp:127:28: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits, long long unsigned int>::value_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:7, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 0; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 0; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:28:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 48 | if (chosen != indices.size()) { | ~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp: In instantiation of 'tatami::DelayedSubset::DelayedSubset(std::shared_ptr >, V) [with int MARGIN = 1; T = double; IDX = int; V = std::vector]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:322:9: required from 'std::shared_ptr<_Tp> tatami::make_DelayedSubset(std::shared_ptr<_Tp>, V) [with int MARGIN = 1; MAT = tatami::Matrix; V = std::vector]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/DelayedSubset.hpp:38:48: required from 'raticate::Parsed raticate::parse_DelayedSubset(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:72:54: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/DelayedSubset.hpp:48:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:40:31: required from 'raticate::Parsed raticate::parse_dgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:63:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::check_values(bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:55:9: required from 'tatami::CompressedSparseMatrix::CompressedSparseMatrix(std::size_t, std::size_t, U, V, W, bool) [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:24:9: required from 'raticate::Parsed raticate::parse_CSparseMatrix(Rcpp::RObject, const V&) [with Data = double; Index = int; V = Rcpp::Vector<10, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/CSparseMatrix.hpp:46:31: required from 'raticate::Parsed raticate::parse_lgCMatrix(Rcpp::RObject) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:65:50: required from 'raticate::Parsed raticate::parse(Rcpp::RObject, bool) [with Data = double; Index = int; Rcpp::RObject = Rcpp::RObject_Impl]' run.cpp:14:58: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:154:41: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 154 | if (indptrs[indptrs.size() - 1] != indices.size()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:167:32: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare] 167 | while (counter < indptrs[i]) { | ~~~~~~~~^~~~~~~~~~ In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:12, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:200:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 187 | if (obj.size() != last - first) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:205:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_dense_dims(const Object&, std::size_t, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:210:35: required from 'void raticate::UnknownMatrixCore::quick_dense_extractor_raw(std::size_t, Data*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:443:73: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:187:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<10, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:298:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] 246 | if (obj.size() != nnzero) { | ~~~~~~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<13>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:303:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp: In instantiation of 'void raticate::UnknownMatrixCore::check_quick_sparse_dims(const Object&, std::size_t) const [with Object = Rcpp::Vector<14, Rcpp::PreserveStorage>; Data = double; Index = int; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:308:36: required from 'void raticate::UnknownMatrixCore::quick_sparse_extractor_raw(std::size_t, std::size_t*, Data*, Index*, std::size_t, std::size_t) const [with bool byrow = true; Data = double; Index = int; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:457:74: required from 'void raticate::UnknownEvaluator::harvest() [with Data = double; Index = int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:554:31: required from 'void raticate::ParallelCoordinator::run(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/parallelize.hpp:37:53: required from 'void raticate::parallelize(std::size_t, Function, std::size_t) [with Data = double; Index = int; Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' utils.h:17:39: required from 'void parallelize(std::size_t, Function, int) [with Function = singlepp::annotate_cells_simple(const tatami::Matrix*, std::size_t, const int*, const std::vector&, const Markers&, double, bool, double, int*, std::vector&, double*, int)::; std::size_t = long long unsigned int]' ../inst/include/singlepp/annotate_cells.hpp:131:16: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/UnknownMatrix.hpp:246:24: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare] In file included from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.h:5, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/tatami.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/utils.hpp:15, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/SimpleMatrix.hpp:4, from F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/raticate/raticate.hpp:5, from utils.h:13, from run.cpp:3: F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::expanded_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: unused variable 'xIt' [-Wunused-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, tatami::ArrayView, tatami::ArrayView >::raw_store; bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = tatami::ArrayView; V = tatami::ArrayView; W = tatami::ArrayView; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::expanded_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:380:28: required from 'void tatami::CompressedSparseMatrix::secondary_dimension_expanded(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:79:13: required from 'const T* tatami::CompressedSparseMatrix::row(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:75:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'std::pair tatami::CompressedSparseMatrix::primary_dimension(std::size_t, std::size_t, std::size_t, std::size_t) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:226:25: required from 'void tatami::CompressedSparseMatrix::primary_dimension_expanded(std::size_t, std::size_t, std::size_t, std::size_t, T*, T) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:88:13: required from 'const T* tatami::CompressedSparseMatrix::column(std::size_t, T*, std::size_t, std::size_t, tatami::Workspace*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:84:14: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:188:14: warning: variable 'xIt' set but not used [-Wunused-but-set-variable] 188 | auto xIt = values.begin() + pstart; | ^~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp: In instantiation of 'void tatami::CompressedSparseMatrix::secondary_dimension(IDX, std::size_t, std::size_t, tatami::Workspace*, STORE&) const [with STORE = tatami::CompressedSparseMatrix, std::vector, std::vector >::raw_store; bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]': F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:362:28: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::secondary_dimension_raw(IDX, std::size_t, std::size_t, tatami::Workspace*, T*, IDX*) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:106:20: required from 'tatami::SparseRange tatami::CompressedSparseMatrix::sparse_row(std::size_t, T*, IDX*, std::size_t, std::size_t, tatami::Workspace*, bool) const [with bool ROW = false; T = double; IDX = int; U = std::vector; V = std::vector; W = std::vector; std::size_t = long long unsigned int]' F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:101:25: required from here F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:312:23: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 312 | if (i == prev_i + 1) { | ~~^~~~~~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:317:34: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 317 | } else if (i + 1 == prev_i) { | ~~~~~~^~~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:322:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 322 | } else if (i > prev_i) { | ~~^~~~~~~~ F:/biocbuild/bbs-3.16-bioc/R/library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp:327:30: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 327 | } else if (i < prev_i) { | ~~^~~~~~~~ g++ -shared -s -static-libgcc -o SingleR.dll tmp.def RcppExports.o find_classic_markers.o integrate_build.o integrate_run.o prebuild.o run.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-SingleR/00new/SingleR/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SingleR)