############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SCArray ### ############################################################################## ############################################################################## * checking for file ‘SCArray/DESCRIPTION’ ... OK * preparing ‘SCArray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Overview.Rmd’ using rmarkdown --- finished re-building ‘Overview.Rmd’ --- re-building ‘SCArray.Rmd’ using rmarkdown Quitting from lines 151-155 (SCArray.Rmd) Error: processing vignette 'SCArray.Rmd' failed with diagnostics: there is no package called 'scater' --- failed re-building ‘SCArray.Rmd’ SUMMARY: processing the following file failed: ‘SCArray.Rmd’ Error: Vignette re-building failed. Execution halted