############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Ringo.buildbin-libdir && mkdir Ringo.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Ringo_1.62.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Ringo.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Ringo.buildbin-libdir Ringo_1.62.0.tar.gz' >>>>>>> * installing *source* package ‘Ringo’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mmeansd.cpp -o mmeansd.o mmeansd.cpp:29:24: warning: variable 'is' set but not used [-Wunused-but-set-variable] int * x, nval, hs, is, i; ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mmedian.cpp -o mmedian.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c region_overlap.c -o region_overlap.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ringo_init.c -o ringo_init.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Ringo.so mmeansd.o mmedian.o region_overlap.o ringo_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/Ringo.buildbin-libdir/00LOCK-Ringo/00new/Ringo/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘ls’ from package ‘base’ in package ‘Ringo’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ringo) >>>>>>> >>>>>>> FIXING LINKS FOR Ringo.buildbin-libdir/Ringo/libs/Ringo.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "Ringo.buildbin-libdir/Ringo/libs/Ringo.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "Ringo.buildbin-libdir/Ringo/libs/Ringo.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "Ringo.buildbin-libdir/Ringo/libs/Ringo.so"