############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ReportingTools ### ############################################################################## ############################################################################## * checking for file ‘ReportingTools/DESCRIPTION’ ... OK * preparing ‘ReportingTools’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘basicReportingTools.Rnw’ using Sweave --- finished re-building ‘basicReportingTools.Rnw’ --- re-building ‘microarrayAnalysis.Rnw’ using Sweave --- finished re-building ‘microarrayAnalysis.Rnw’ --- re-building ‘rnaseqAnalysis.Rnw’ using Sweave --- finished re-building ‘rnaseqAnalysis.Rnw’ --- re-building ‘shiny.Rnw’ using Sweave --- finished re-building ‘shiny.Rnw’ --- re-building ‘knitr.Rmd’ using knitr Warning in file(con, "r") : cannot open file 'jslib/jquery-1.8.0.min.js': No such file or directory Error: processing vignette 'knitr.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘knitr.Rmd’ SUMMARY: processing the following file failed: ‘knitr.Rmd’ Error: Vignette re-building failed. Execution halted