############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MLP ### ############################################################################## ############################################################################## * checking for file ‘MLP/DESCRIPTION’ ... OK * preparing ‘MLP’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘UsingMLP.Rnw’ using Sweave Loading required package: MLP Loading required package: limma Loading required package: stats4 Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following object is masked from ‘package:limma’: plotMA The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: IRanges Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required namespace: GO.db Loading required namespace: org.Mm.eg.db Loading required namespace: Rgraphviz Loading required namespace: GOstats Failed with error: ‘there is no package called ‘GOstats’’ Loading required namespace: annotate Loading required namespace: gplots Error: processing vignette 'UsingMLP.Rnw' failed with diagnostics: chunk 10 (label = GOgraph) Error in loadNamespace(x) : there is no package called ‘GOstats’ --- failed re-building ‘UsingMLP.Rnw’ SUMMARY: processing the following file failed: ‘UsingMLP.Rnw’ Error: Vignette re-building failed. Execution halted