############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.56.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R HilbertVis.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVis.buildbin-libdir HilbertVis_1.56.0.tar.gz' >>>>>>> * installing *source* package ‘HilbertVis’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hilbert.c -o hilbert.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c make_wiggle_vector.c -o make_wiggle_vector.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c shrink_vector.c -o shrink_vector.o shrink_vector.c:76:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if( abs( REAL( vector )[ j ] ) > abs( val ) ) ^ shrink_vector.c:76:20: note: use function 'fabs' instead if( abs( REAL( vector )[ j ] ) > abs( val ) ) ^~~ fabs shrink_vector.c:76:49: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] if( abs( REAL( vector )[ j ] ) > abs( val ) ) ^ shrink_vector.c:76:49: note: use function 'fabs' instead if( abs( REAL( vector )[ j ] ) > abs( val ) ) ^~~ fabs 2 warnings generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/HilbertVis.buildbin-libdir/00LOCK-HilbertVis/00new/HilbertVis/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertVis) >>>>>>> >>>>>>> FIXING LINKS FOR HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so"