############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GeneSelectMMD ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘GeneSelectMMD’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c Qfunc.f -o Qfunc.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c blas.f -o blas.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c isnan.c -o isnan.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c lbfgsb.f -o lbfgsb.o lbfgsb.f:1409:25: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ Warning: ‘tu’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1482:72: 1482 | t(nbreak) = tl/(-neggi) | ^ Warning: ‘tl’ may be used uninitialized [-Wmaybe-uninitialized] lbfgsb.f:1409:28: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ note: ‘tl’ was declared here /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c lbfgsbDriver.f -o lbfgsbDriver.o lbfgsbDriver.f:243:71: 243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax) | 1 Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising] /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c linpack.f -o linpack.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c llkhFun.f -o llkhFun.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c myTtest.f -o myTtest.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c paraEstLoop.f -o paraEstLoop.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pt.c -o pt.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c timer.f -o timer.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c wiFun.f -o wiFun.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: object file (Qfunc.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: object file (blas.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _dcopy_: register 22 saved somewhere other than in frame ld: warning: could not create compact unwind for _negqfunc_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _dnegqfunc_: registers 78 and 79 not saved contiguously in frame ld: warning: object file (lbfgsb.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _prn1lb_.part.0: registers 72 and 73 not saved contiguously in frame ld: warning: could not create compact unwind for _prn3lb_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _matupd_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _prn2lb_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _dcsrch_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _lnsrlb_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _subsm_: register 73 saved somewhere other than in frame ld: warning: could not create compact unwind for _freev_: registers 25 and 26 not saved contiguously in frame ld: warning: could not create compact unwind for _cauchy_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _active_: registers 19 and 20 not saved contiguously in frame ld: warning: could not create compact unwind for _mainlb_: registers 72 and 73 not saved contiguously in frame ld: warning: could not create compact unwind for _setulb_: registers 27 and 28 not saved contiguously in frame ld: warning: object file (lbfgsbDriver.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _lbfgsbdriver_: registers 27 and 28 not saved contiguously in frame ld: warning: object file (llkhFun.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _llkhfun_: registers 78 and 79 not saved contiguously in frame ld: warning: object file (myTtest.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _myttest_: register 75 saved somewhere other than in frame ld: warning: object file (paraEstLoop.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _paraestloop_: registers 27 and 28 not saved contiguously in frame ld: warning: object file (timer.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: object file (wiFun.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _wifun_: registers 78 and 79 not saved contiguously in frame ld: warning: object file (linpack.o) was built for newer macOS version (12.4) than being linked (12.0) ld: warning: could not create compact unwind for _dtrsl_: registers 27 and 28 not saved contiguously in frame installing to /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeneSelectMMD)