############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GOfuncR ### ############################################################################## ############################################################################## * checking for file ‘GOfuncR/DESCRIPTION’ ... OK * preparing ‘GOfuncR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GOfuncR.Rmd’ using rmarkdown Loading required package: vioplot Loading required package: sm Package 'sm', version 2.2-5.7: type help(sm) for summary information Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Checking arguments... Quitting from lines 111-114 (GOfuncR.Rmd) Error: processing vignette 'GOfuncR.Rmd' failed with diagnostics: database 'Homo.sapiens' is not installed. Please install it from bioconductor: if (!requireNamespace('BiocManager', quietly = TRUE)) install.packages('BiocManager') BiocManager::install('Homo.sapiens') --- failed re-building ‘GOfuncR.Rmd’ SUMMARY: processing the following file failed: ‘GOfuncR.Rmd’ Error: Vignette re-building failed. Execution halted