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### Running command:
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###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:EnMCB.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/library --timings EnMCB_1.10.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/EnMCB.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘EnMCB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EnMCB’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EnMCB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘EnMCB-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: IdentifyMCB
> ### Title: Identification of methylation correlated blocks
> ### Aliases: IdentifyMCB
> 
> ### ** Examples
> 
> data('demo_data',package = "EnMCB")
> 
> #import the demo TCGA data with 10000+ CpGs site and 455 samples
> #remove # to run
> res<-IdentifyMCB(demo_data$realdata)
Start calculating the correlation, this may take a while...
Warning in gzfile(file, "rb") :
  cannot open compressed file '/home/biocbuild/.cache/R/BiocFileCache/13ce7b4c1d6151_file13ce7b2394bb31', probable reason 'No such file or directory'
Error in gzfile(file, "rb") : cannot open the connection
Calls: IdentifyMCB -> get450kAnno -> readRDS -> gzfile
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-hello.R:5'): multiplication works ──────────────────────────────
  Error in `gzfile(file, "rb")`: cannot open the connection
  Backtrace:
      ▆
   1. └─EnMCB::IdentifyMCB(demo_data$realdata) at test-hello.R:5:2
   2.   └─EnMCB:::get450kAnno()
   3.     └─base::readRDS(rev(q$rpath)[1])
   4.       └─base::gzfile(file, "rb")
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘vignette.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘vignette.Rmd’ using rmarkdown
Warning in gzfile(file, "rb") :
  cannot open compressed file '/home/biocbuild/.cache/R/BiocFileCache/13ce7b4c1d6151_file13ce7b2394bb31', probable reason 'No such file or directory'
Quitting from lines 42-49 (vignette.Rmd) 
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 3 ERRORs
See
  ‘/home/biocbuild/bbs-3.16-bioc/meat/EnMCB.Rcheck/00check.log’
for details.