############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DeMixT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘DeMixT’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DeMixT.c -o DeMixT.o DeMixT.c:268:28: error: implicit declaration of function 'Rprintf' is invalid in C99 [-Werror,-Wimplicit-function-declaration] if (nHavepi != 1) Rprintf("Iteration %d: updating parameters\n", i+1); ^ DeMixT.c:36:33: warning: variable 'st1_sig_2' set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^ DeMixT.c:36:22: warning: variable 'st2_mu_2' set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^ DeMixT.c:36:45: warning: variable 'st2_sig_2' set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^ DeMixT.c:36:11: warning: variable 'st1_mu_2' set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^ DeMixT.c:484:21: error: implicit declaration of function 'Rprintf' is invalid in C99 [-Werror,-Wimplicit-function-declaration] if (nHavepi != 1) Rprintf("There are %d normals and %d tumors\n", fNorm,intx); ^ DeMixT.c:590:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:590:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:1279:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:1279:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:1306:9: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:1306:18: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:1321:21: warning: variable 'obj_new' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ DeMixT.c:1321:12: warning: variable 'obj_old' set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^ 12 warnings and 2 errors generated. make: *** [DeMixT.o] Error 1 ERROR: compilation failed for package ‘DeMixT’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/DeMixT’