############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.62.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'BufferedMatrixMethods' ... ** using staged installation ** libs gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/BufferedMatrix/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.16-bioc/R/library/BufferedMatrix/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o preprocess_bm.c: In function 'bm_rma_bg_correct': preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable] 344 | int i,j; | ^ preprocess_bm.c: In function 'R_bm_rma_bg_correct': preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable] 378 | int current_mode; | ^~~~~~~~~~~~ preprocess_bm.c: In function 'R_bm_quantile_normalize': preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable] 593 | int current_mode; | ^~~~~~~~~~~~ preprocess_bm.c: In function 'do_RMA_buffmat': preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable] 924 | int first_ind; | ^~~~~~~~~ preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize': preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable] 1151 | int current_mode; | ^~~~~~~~~~~~ At top level: preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function] 453 | static int min(int x1,int x2){ | ^~~ gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/meat/BufferedMatrixMethods.buildbin-libdir/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs/x64 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'BufferedMatrixMethods' as BufferedMatrixMethods_1.62.0.zip * DONE (BufferedMatrixMethods)