############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel ### ############################################################################## ############################################################################## * checking for file ‘BiocParallel/DESCRIPTION’ ... OK * preparing ‘BiocParallel’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocParallel_BatchtoolsParam.Rnw’ using knitr --- finished re-building ‘BiocParallel_BatchtoolsParam.Rnw’ --- re-building ‘Errors_Logs_And_Debugging.Rnw’ using knitr --- finished re-building ‘Errors_Logs_And_Debugging.Rnw’ --- re-building ‘Introduction_To_BiocParallel.Rnw’ using knitr Quitting from lines 14-21 (Introduction_To_BiocParallel.Rnw) Error: processing vignette 'Introduction_To_BiocParallel.Rnw' failed with diagnostics: there is no package called 'VariantAnnotation' --- failed re-building ‘Introduction_To_BiocParallel.Rnw’ --- re-building ‘Random_Numbers.Rnw’ using knitr --- finished re-building ‘Random_Numbers.Rnw’ SUMMARY: processing the following file failed: ‘Introduction_To_BiocParallel.Rnw’ Error: Vignette re-building failed. Execution halted