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###
### Running command:
###
###   rm -rf BUSseq.buildbin-libdir && mkdir BUSseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BUSseq_1.4.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BUSseq.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BUSseq.buildbin-libdir BUSseq_1.4.2.tar.gz'
>>>>>>> 

* installing *source* package ‘BUSseq’ ...
** using staged installation
** libs
/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: warning: overriding commands for target `BUSseq.so'
Makevars:9: warning: ignoring old commands for target `BUSseq.so'
/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: warning: overriding commands for target `BUSseq.so'
Makevars:9: warning: ignoring old commands for target `BUSseq.so'
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c BUSseq.cpp -o BUSseq.o
BUSseq.cpp:2674:7: warning: variable 'All_Drop' set but not used [-Wunused-but-set-variable]
        bool All_Drop = true;
             ^
BUSseq.cpp:3033:6: warning: variable 'count_gene' set but not used [-Wunused-but-set-variable]
        int count_gene = 0;
            ^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rngstream.cpp -o rngstream.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BUSseq.so BUSseq.o rngstream.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: dylib (/usr/local/gfortran/lib/libgfortran.dylib) was built for newer macOS version (10.14) than being linked (10.13)
ld: warning: dylib (/usr/local/gfortran/lib/libquadmath.dylib) was built for newer macOS version (10.14) than being linked (10.13)
installing to /Users/biocbuild/bbs-3.16-bioc/meat/BUSseq.buildbin-libdir/00LOCK-BUSseq/00new/BUSseq/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BUSseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"