############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge ### ############################################################################## ############################################################################## * checking for file ‘AnnotationForge/DESCRIPTION’ ... OK * preparing ‘AnnotationForge’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr Quitting from lines 54-57 (MakingNewAnnotationPackages.Rnw) Error: processing vignette 'MakingNewAnnotationPackages.Rnw' failed with diagnostics: there is no package called 'Homo.sapiens' --- failed re-building ‘MakingNewAnnotationPackages.Rnw’ --- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr --- finished re-building ‘MakingNewOrganismPackages.Rmd’ --- re-building ‘SQLForge.Rnw’ using knitr Warning: call dbDisconnect() when finished working with a connection --- finished re-building ‘SQLForge.Rnw’ --- re-building ‘makeProbePackage.Rnw’ using knitr See ‘/private/tmp/Rtmp5fWSIk/hgu95av2probe.Rcheck/00check.log’ for details. --- finished re-building ‘makeProbePackage.Rnw’ SUMMARY: processing the following file failed: ‘MakingNewAnnotationPackages.Rnw’ Error: Vignette re-building failed. Execution halted