Aaron Taudt
| Snapshot Date: 2023-03-17 14:00:04 -0400 (Fri, 17 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/AneuFinder |
| git_branch: RELEASE_3_16 |
| git_last_commit: 7cd59a1 |
| git_last_commit_date: 2022-11-01 11:13:19 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-03-20 11:05:20 -0400 (Mon, 20 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4516 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" | 4295 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4324 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the AneuFinder package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 50/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AneuFinder 1.26.0 (landing page) Aaron Taudt
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: AneuFinder |
| Version: 1.26.0 |
| Command: rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=AneuFinder.buildbin-libdir AneuFinder_1.26.0.tar.gz |
| StartedAt: 2023-03-18 07:37:13 -0400 (Sat, 18 Mar 2023) |
| EndedAt: 2023-03-18 07:38:04 -0400 (Sat, 18 Mar 2023) |
| EllapsedTime: 50.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: AneuFinder_1.26.0.zip |
| PackageFileSize: 2.527 MiB |
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### Running command:
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### rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=AneuFinder.buildbin-libdir AneuFinder_1.26.0.tar.gz
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* installing *source* package 'AneuFinder' ...
** using staged installation
** libs
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_interface.cpp -o R_interface.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c densities.cpp -o densities.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
320 | #pragma omp parallel for
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loghmm.cpp:480: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
480 | #pragma omp parallel for
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loghmm.cpp:518: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
518 | #pragma omp parallel for
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loghmm.cpp:583: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
583 | #pragma omp parallel for
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g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
384 | #pragma omp parallel for
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scalehmm.cpp:400: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
400 | #pragma omp parallel for
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scalehmm.cpp:694: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
694 | #pragma omp parallel for
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scalehmm.cpp:732: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
732 | #pragma omp parallel for
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scalehmm.cpp:791: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
791 | #pragma omp parallel for
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g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utility.cpp -o utility.o
g++ -std=gnu++11 -shared -s -static-libgcc -o AneuFinder.dll tmp.def R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/AneuFinder.buildbin-libdir/00LOCK-AneuFinder/00new/AneuFinder/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'AneuFinder' as AneuFinder_1.26.0.zip
* DONE (AneuFinder)