Back to Build/check report for BioC 3.15 experimental data
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This page was generated on 2022-10-18 14:50:12 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for geneLenDataBase on nebbiolo1


To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 140/410HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.32.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_15
git_last_commit: eaa193a
git_last_commit_date: 2022-04-26 13:00:23 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.32.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings geneLenDataBase_1.32.0.tar.gz
StartedAt: 2022-10-18 11:23:29 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 11:30:39 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 429.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings geneLenDataBase_1.32.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.32.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.0Mb
  sub-directories of 1Mb or more:
    data  99.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0640.0040.068
anoCar1.genscan.LENGTH0.0380.0000.039
anoCar1.xenoRefGene.LENGTH0.6600.0070.669
anoGam1.ensGene.LENGTH0.0490.0000.049
anoGam1.geneid.LENGTH0.0320.0050.036
anoGam1.genscan.LENGTH0.0310.0030.034
apiMel1.genscan.LENGTH0.0350.0000.035
apiMel2.ensGene.LENGTH0.0680.0040.071
apiMel2.geneid.LENGTH0.0380.0000.038
apiMel2.genscan.LENGTH0.0860.0000.087
aplCal1.xenoRefGene.LENGTH0.3130.0080.320
bosTau2.geneSymbol.LENGTH0.0320.0000.032
bosTau2.geneid.LENGTH0.1970.0000.197
bosTau2.genscan.LENGTH0.0710.0000.071
bosTau2.refGene.LENGTH0.0330.0000.034
bosTau2.sgpGene.LENGTH0.0820.0000.082
bosTau3.ensGene.LENGTH0.1440.0080.152
bosTau3.geneSymbol.LENGTH0.030.000.03
bosTau3.geneid.LENGTH0.0970.0000.096
bosTau3.genscan.LENGTH0.0580.0000.058
bosTau3.refGene.LENGTH0.0290.0000.028
bosTau3.sgpGene.LENGTH0.0720.0000.072
bosTau4.ensGene.LENGTH0.0820.0000.082
bosTau4.geneSymbol.LENGTH0.0290.0000.028
bosTau4.genscan.LENGTH0.0520.0040.056
bosTau4.nscanGene.LENGTH0.0240.0000.024
bosTau4.refGene.LENGTH0.0260.0000.026
braFlo1.xenoRefGene.LENGTH0.3010.0000.302
caeJap1.xenoRefGene.LENGTH0.2740.0070.280
caePb1.xenoRefGene.LENGTH0.3680.0000.367
caePb2.xenoRefGene.LENGTH0.4600.0090.467
caeRem2.xenoRefGene.LENGTH0.3210.0000.321
caeRem3.xenoRefGene.LENGTH0.2690.0040.274
calJac1.genscan.LENGTH0.0680.0000.068
calJac1.nscanGene.LENGTH0.0830.0000.082
calJac1.xenoRefGene.LENGTH0.5420.0040.545
canFam1.ensGene.LENGTH0.0820.0040.085
canFam1.geneSymbol.LENGTH0.0050.0000.005
canFam1.genscan.LENGTH0.0510.0000.051
canFam1.nscanGene.LENGTH0.0520.0000.051
canFam1.refGene.LENGTH0.0050.0000.004
canFam1.xenoRefGene.LENGTH0.4890.0000.489
canFam2.ensGene.LENGTH0.1650.0030.170
canFam2.geneSymbol.LENGTH0.0050.0000.005
canFam2.genscan.LENGTH0.0430.0040.046
canFam2.nscanGene.LENGTH0.0520.0000.052
canFam2.refGene.LENGTH0.0040.0000.005
canFam2.xenoRefGene.LENGTH0.480.000.48
cavPor3.ensGene.LENGTH0.0760.0000.076
cavPor3.genscan.LENGTH0.0890.0010.090
cavPor3.nscanGene.LENGTH0.0530.0070.059
cavPor3.xenoRefGene.LENGTH0.5100.0070.518
cb1.xenoRefGene.LENGTH0.3560.0000.357
cb3.xenoRefGene.LENGTH0.4030.0180.422
ce2.geneSymbol.LENGTH0.0640.0010.065
ce2.geneid.LENGTH0.0500.0030.054
ce2.refGene.LENGTH0.0530.0040.058
ce4.geneSymbol.LENGTH0.0580.0000.058
ce4.refGene.LENGTH0.0510.0000.051
ce4.xenoRefGene.LENGTH0.0630.0030.068
ce6.ensGene.LENGTH0.0850.0010.086
ce6.geneSymbol.LENGTH0.0580.0020.061
ce6.refGene.LENGTH0.0530.0010.053
ce6.xenoRefGene.LENGTH0.0620.0020.065
ci1.geneSymbol.LENGTH0.0050.0000.004
ci1.refGene.LENGTH0.0040.0000.004
ci1.xenoRefGene.LENGTH0.1350.0040.138
ci2.ensGene.LENGTH0.0500.0040.053
ci2.geneSymbol.LENGTH0.0050.0000.004
ci2.refGene.LENGTH0.0040.0000.004
ci2.xenoRefGene.LENGTH0.2170.0040.222
danRer3.ensGene.LENGTH0.8400.0840.925
danRer3.geneSymbol.LENGTH0.0440.0000.043
danRer3.refGene.LENGTH0.0390.0000.039
danRer4.ensGene.LENGTH0.0930.0000.092
danRer4.geneSymbol.LENGTH0.0370.0040.041
danRer4.genscan.LENGTH0.0440.0040.047
danRer4.nscanGene.LENGTH0.0610.0040.064
danRer4.refGene.LENGTH0.0370.0000.037
danRer5.ensGene.LENGTH0.0880.0000.088
danRer5.geneSymbol.LENGTH0.0370.0010.037
danRer5.refGene.LENGTH0.0320.0030.034
danRer5.vegaGene.LENGTH0.0330.0040.037
danRer5.vegaPseudoGene.LENGTH0.0020.0000.003
danRer6.ensGene.LENGTH0.0840.0040.088
danRer6.geneSymbol.LENGTH0.0350.0040.038
danRer6.refGene.LENGTH0.0360.0000.035
danRer6.xenoRefGene.LENGTH0.3930.0000.393
dm1.geneSymbol.LENGTH0.0540.0000.054
dm1.genscan.LENGTH0.0210.0000.021
dm1.refGene.LENGTH0.0450.0040.049
dm2.geneSymbol.LENGTH0.0490.0040.054
dm2.geneid.LENGTH0.0320.0000.031
dm2.genscan.LENGTH0.0200.0000.021
dm2.nscanGene.LENGTH0.0400.0040.044
dm2.refGene.LENGTH0.050.000.05
dm3.geneSymbol.LENGTH0.0580.0000.058
dm3.nscanPasaGene.LENGTH0.0430.0000.043
dm3.refGene.LENGTH0.0520.0000.052
dp2.genscan.LENGTH0.0250.0000.025
dp2.xenoRefGene.LENGTH0.1510.0010.152
dp3.geneid.LENGTH0.0300.0030.032
dp3.genscan.LENGTH0.0210.0000.021
dp3.xenoRefGene.LENGTH0.0850.0000.084
droAna1.geneid.LENGTH0.0600.0000.059
droAna1.genscan.LENGTH0.0160.0040.019
droAna1.xenoRefGene.LENGTH0.1660.0000.165
droAna2.genscan.LENGTH0.0380.0010.038
droAna2.xenoRefGene.LENGTH0.2080.0030.210
droEre1.genscan.LENGTH0.0200.0040.025
droEre1.xenoRefGene.LENGTH0.2050.0000.205
droGri1.genscan.LENGTH0.0370.0000.038
droGri1.xenoRefGene.LENGTH0.2220.0040.225
droMoj1.geneid.LENGTH0.1030.0040.106
droMoj1.genscan.LENGTH0.0450.0040.049
droMoj1.xenoRefGene.LENGTH0.1630.0010.164
droMoj2.genscan.LENGTH0.0270.0030.029
droMoj2.xenoRefGene.LENGTH0.2410.0080.248
droPer1.genscan.LENGTH0.0290.0000.029
droPer1.xenoRefGene.LENGTH0.1920.0000.192
droSec1.genscan.LENGTH0.0230.0000.023
droSec1.xenoRefGene.LENGTH0.1920.0000.192
droSim1.geneid.LENGTH0.0290.0000.029
droSim1.genscan.LENGTH0.0200.0000.019
droSim1.xenoRefGene.LENGTH0.1810.0000.181
droVir1.geneid.LENGTH0.090.000.09
droVir1.genscan.LENGTH0.0360.0000.035
droVir1.xenoRefGene.LENGTH0.1950.0040.199
droVir2.genscan.LENGTH0.0310.0000.031
droVir2.xenoRefGene.LENGTH0.2080.0040.211
droYak1.geneid.LENGTH0.0310.0040.035
droYak1.genscan.LENGTH0.0250.0000.025
droYak1.xenoRefGene.LENGTH0.1740.0000.175
droYak2.genscan.LENGTH0.0270.0000.027
droYak2.xenoRefGene.LENGTH0.2050.0000.204
equCab1.geneSymbol.LENGTH0.0050.0000.004
equCab1.geneid.LENGTH0.0680.0000.067
equCab1.nscanGene.LENGTH0.0320.0000.032
equCab1.refGene.LENGTH0.0040.0000.004
equCab1.sgpGene.LENGTH0.0490.0040.053
equCab2.ensGene.LENGTH0.0810.0000.081
equCab2.geneSymbol.LENGTH0.0060.0000.006
equCab2.nscanGene.LENGTH0.0440.0000.045
equCab2.refGene.LENGTH0.0060.0000.007
equCab2.xenoRefGene.LENGTH0.4530.0080.461
felCat3.ensGene.LENGTH0.0870.0000.086
felCat3.geneSymbol.LENGTH0.0040.0000.004
felCat3.geneid.LENGTH0.5330.0080.541
felCat3.genscan.LENGTH0.0980.0010.099
felCat3.nscanGene.LENGTH0.0760.0030.078
felCat3.refGene.LENGTH0.0030.0000.004
felCat3.sgpGene.LENGTH0.1190.0030.123
felCat3.xenoRefGene.LENGTH0.8790.0000.879
fr1.ensGene.LENGTH0.0620.0040.066
fr1.genscan.LENGTH0.0520.0000.052
fr2.ensGene.LENGTH0.1080.0000.108
galGal2.ensGene.LENGTH0.0490.0000.049
galGal2.geneSymbol.LENGTH0.0150.0000.014
galGal2.geneid.LENGTH0.0330.0000.033
galGal2.genscan.LENGTH0.0440.0000.045
galGal2.refGene.LENGTH0.0130.0000.014
galGal2.sgpGene.LENGTH0.0360.0040.040
galGal3.ensGene.LENGTH0.9140.0630.977
galGal3.geneSymbol.LENGTH0.0120.0010.012
galGal3.genscan.LENGTH0.0360.0000.036
galGal3.nscanGene.LENGTH0.0480.0040.051
galGal3.refGene.LENGTH0.0110.0000.011
galGal3.xenoRefGene.LENGTH0.3490.0000.349
gasAcu1.ensGene.LENGTH0.0630.0040.066
gasAcu1.nscanGene.LENGTH0.0680.0000.068
hg16.acembly.LENGTH0.2610.0000.261
hg16.ensGene.LENGTH0.0750.0000.076
hg16.exoniphy.LENGTH0.2090.0000.210
hg16.geneSymbol.LENGTH0.0860.0030.090
hg16.geneid.LENGTH0.0490.0010.048
hg16.genscan.LENGTH0.0570.0000.057
hg16.knownGene.LENGTH0.0990.0040.104
hg16.refGene.LENGTH0.0800.0040.084
hg16.sgpGene.LENGTH0.0450.0000.046
hg17.acembly.LENGTH0.3440.0120.356
hg17.acescan.LENGTH0.0090.0000.009
hg17.ccdsGene.LENGTH0.0120.0090.020
hg17.ensGene.LENGTH0.0800.0070.086
hg17.exoniphy.LENGTH0.3140.0000.313
hg17.geneSymbol.LENGTH0.0820.0000.082
hg17.geneid.LENGTH0.0610.0000.060
hg17.genscan.LENGTH0.0460.0000.046
hg17.knownGene.LENGTH0.0830.0000.084
hg17.refGene.LENGTH0.0710.0040.075
hg17.sgpGene.LENGTH0.0500.0030.054
hg17.vegaGene.LENGTH0.0340.0020.034
hg17.vegaPseudoGene.LENGTH0.0120.0030.015
hg17.xenoRefGene.LENGTH0.1570.0000.156
hg18.acembly.LENGTH0.3710.0160.386
hg18.acescan.LENGTH0.0070.0010.008
hg18.ccdsGene.LENGTH0.0260.0030.027
hg18.ensGene.LENGTH0.1640.0040.168
hg18.exoniphy.LENGTH0.3580.0040.362
hg18.geneSymbol.LENGTH0.0870.0000.086
hg18.geneid.LENGTH0.060.000.06
hg18.genscan.LENGTH0.0450.0040.050
hg18.knownGene.LENGTH0.4690.0080.477
hg18.knownGeneOld3.LENGTH0.0500.0040.053
hg18.refGene.LENGTH0.0730.0030.076
hg18.sgpGene.LENGTH0.0630.0010.062
hg18.sibGene.LENGTH0.2520.0040.255
hg18.xenoRefGene.LENGTH0.2650.0000.265
hg19.ccdsGene.LENGTH0.0320.0000.032
hg19.ensGene.LENGTH0.2270.0000.227
hg19.exoniphy.LENGTH0.3320.0080.340
hg19.geneSymbol.LENGTH0.0740.0030.078
hg19.knownGene.LENGTH0.1560.0050.161
hg19.nscanGene.LENGTH0.1510.0020.153
hg19.refGene.LENGTH0.0750.0000.076
hg19.xenoRefGene.LENGTH0.2560.0000.256
loxAfr3.xenoRefGene.LENGTH0.5730.0000.572
mm7.ensGene.LENGTH0.0940.0030.097
mm7.geneSymbol.LENGTH0.0730.0010.073
mm7.geneid.LENGTH0.0630.0000.064
mm7.genscan.LENGTH0.0490.0040.052
mm7.knownGene.LENGTH0.0750.0040.078
mm7.refGene.LENGTH0.0630.0040.066
mm7.sgpGene.LENGTH0.0660.0000.066
mm7.xenoRefGene.LENGTH0.2340.0000.235
mm8.ccdsGene.LENGTH0.0150.0040.019
mm8.ensGene.LENGTH0.0660.0000.066
mm8.geneSymbol.LENGTH0.070.000.07
mm8.geneid.LENGTH0.0640.0000.065
mm8.genscan.LENGTH0.0440.0040.048
mm8.knownGene.LENGTH0.0730.0000.073
mm8.nscanGene.LENGTH0.1380.0070.146
mm8.refGene.LENGTH0.0680.0000.069
mm8.sgpGene.LENGTH0.0630.0050.069
mm8.sibGene.LENGTH0.1950.0020.196
mm8.xenoRefGene.LENGTH0.2740.0010.274
mm9.acembly.LENGTH0.2490.0030.252
mm9.ccdsGene.LENGTH0.0250.0010.024
mm9.ensGene.LENGTH0.1180.0040.121
mm9.exoniphy.LENGTH0.3480.0000.348
mm9.geneSymbol.LENGTH0.0740.0000.074
mm9.geneid.LENGTH0.0680.0040.072
mm9.genscan.LENGTH0.0540.0040.058
mm9.knownGene.LENGTH0.0920.0000.091
mm9.nscanGene.LENGTH0.0530.0010.053
mm9.refGene.LENGTH0.0670.0030.070
mm9.sgpGene.LENGTH0.0710.0000.071
mm9.xenoRefGene.LENGTH0.270.000.27
monDom1.genscan.LENGTH0.0520.0000.051
monDom4.ensGene.LENGTH0.0520.0070.059
monDom4.geneSymbol.LENGTH0.0030.0010.003
monDom4.genscan.LENGTH0.0410.0010.043
monDom4.nscanGene.LENGTH0.0410.0030.043
monDom4.refGene.LENGTH0.0030.0000.003
monDom4.xenoRefGene.LENGTH0.2480.0040.251
monDom5.ensGene.LENGTH0.0790.0080.087
monDom5.geneSymbol.LENGTH0.0040.0000.005
monDom5.genscan.LENGTH0.0520.0000.052
monDom5.nscanGene.LENGTH0.0950.0000.095
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.4300.0060.437
ornAna1.ensGene.LENGTH0.2960.0120.307
ornAna1.geneSymbol.LENGTH0.0030.0000.002
ornAna1.refGene.LENGTH0.0020.0000.002
ornAna1.xenoRefGene.LENGTH0.4180.0000.418
oryLat2.ensGene.LENGTH0.0650.0040.069
oryLat2.geneSymbol.LENGTH0.0030.0000.004
oryLat2.refGene.LENGTH0.0030.0000.004
oryLat2.xenoRefGene.LENGTH0.3700.0030.373
panTro1.ensGene.LENGTH0.080.000.08
panTro1.geneid.LENGTH0.0390.0000.040
panTro1.genscan.LENGTH0.0490.0000.050
panTro1.xenoRefGene.LENGTH0.0850.0000.084
panTro2.ensGene.LENGTH0.0890.0000.089
panTro2.geneSymbol.LENGTH0.0720.0040.075
panTro2.genscan.LENGTH0.0490.0000.049
panTro2.nscanGene.LENGTH0.050.000.05
panTro2.refGene.LENGTH0.0780.0000.079
panTro2.xenoRefGene.LENGTH0.3540.0040.358
petMar1.xenoRefGene.LENGTH0.1940.0000.195
ponAbe2.ensGene.LENGTH0.0660.0030.070
ponAbe2.geneSymbol.LENGTH0.0100.0010.010
ponAbe2.genscan.LENGTH0.0510.0000.051
ponAbe2.nscanGene.LENGTH0.0500.0000.049
ponAbe2.refGene.LENGTH0.010.000.01
ponAbe2.xenoRefGene.LENGTH0.4520.0200.471
priPac1.xenoRefGene.LENGTH0.7780.0110.790
rheMac2.ensGene.LENGTH0.1000.0000.101
rheMac2.geneSymbol.LENGTH0.0040.0010.004
rheMac2.geneid.LENGTH0.0590.0030.062
rheMac2.nscanGene.LENGTH0.0480.0050.052
rheMac2.refGene.LENGTH0.0020.0020.005
rheMac2.sgpGene.LENGTH0.0610.0010.061
rheMac2.xenoRefGene.LENGTH0.3860.0000.387
rn3.ensGene.LENGTH0.0880.0000.088
rn3.geneSymbol.LENGTH0.0440.0000.045
rn3.geneid.LENGTH0.0450.0000.045
rn3.genscan.LENGTH0.0550.0000.055
rn3.knownGene.LENGTH0.0200.0000.019
rn3.nscanGene.LENGTH0.0530.0000.052
rn3.refGene.LENGTH0.0400.0010.041
rn3.sgpGene.LENGTH0.0440.0070.049
rn3.xenoRefGene.LENGTH0.4170.0040.420
rn4.ensGene.LENGTH0.1070.0010.108
rn4.geneSymbol.LENGTH0.0530.0030.054
rn4.geneid.LENGTH0.0770.0040.080
rn4.genscan.LENGTH0.0530.0000.053
rn4.knownGene.LENGTH0.0200.0000.021
rn4.nscanGene.LENGTH0.0500.0000.051
rn4.refGene.LENGTH0.0420.0000.042
rn4.sgpGene.LENGTH0.0750.0010.075
rn4.xenoRefGene.LENGTH0.2440.0070.250
sacCer1.ensGene.LENGTH0.0120.0040.016
sacCer2.ensGene.LENGTH0.0140.0000.015
strPur1.geneSymbol.LENGTH0.0030.0000.004
strPur1.genscan.LENGTH0.050.000.05
strPur1.refGene.LENGTH0.0030.0000.004
strPur1.xenoRefGene.LENGTH0.3630.0000.364
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.0890.0000.089
strPur2.refGene.LENGTH0.0000.0030.003
strPur2.xenoRefGene.LENGTH0.4970.0050.501
supportedGeneIDs0.1020.0242.615
supportedGenomes0.1670.0120.899
taeGut1.ensGene.LENGTH0.0500.0040.055
taeGut1.geneSymbol.LENGTH0.0020.0000.003
taeGut1.genscan.LENGTH0.2490.0040.254
taeGut1.nscanGene.LENGTH0.0220.0000.022
taeGut1.refGene.LENGTH0.0030.0000.002
taeGut1.xenoRefGene.LENGTH0.3340.0080.341
tetNig1.ensGene.LENGTH0.0640.0240.088
tetNig1.geneid.LENGTH0.0560.0000.055
tetNig1.genscan.LENGTH0.0420.0000.042
tetNig1.nscanGene.LENGTH0.0570.0040.061
tetNig2.ensGene.LENGTH0.0650.0000.064
unfactor0.0020.0040.005
xenTro1.genscan.LENGTH0.0720.0000.072
xenTro2.ensGene.LENGTH0.0690.0000.069
xenTro2.geneSymbol.LENGTH0.0210.0040.025
xenTro2.genscan.LENGTH0.0590.0010.060
xenTro2.refGene.LENGTH0.0220.0020.024