############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSstatsBioData ### ############################################################################## ############################################################################## * checking for file ‘MSstatsBioData/DESCRIPTION’ ... OK * preparing ‘MSstatsBioData’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MSstatsBioData.Rmd’ using knitr Loading required package: MSstatsBioData Warning: Package 'MSstatsBioData' is deprecated and will be removed from Bioconductor version 3.16 Loading required package: MSstats Attaching package: 'MSstats' The following object is masked from 'package:grDevices': savePlot Quitting from lines 83-91 (MSstatsBioData.Rmd) Error: processing vignette 'MSstatsBioData.Rmd' failed with diagnostics: unused argument (cutoffCensored = "minFeature") --- failed re-building ‘MSstatsBioData.Rmd’ SUMMARY: processing the following file failed: ‘MSstatsBioData.Rmd’ Error: Vignette re-building failed. Execution halted