############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings MEDIPSData_1.31.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/MEDIPSData.Rcheck’ * using R Under development (unstable) (2022-01-05 r81451) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MEDIPSData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MEDIPSData’ version ‘1.31.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MEDIPSData’ can be installed ... OK * checking installed package size ... NOTE installed size is 168.8Mb sub-directories of 1Mb or more: data 25.0Mb extdata 143.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... WARNING File ‘data/datalist’ contains malformed line(s): ‘’ * checking data for non-ASCII characters ... WARNING Error loading dataset 'CS': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'DE_Input': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'DE_MeDIP': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'hESCs_Input': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'hESCs_MeDIP': Error in .requirePackage(package) : unable to find required package 'MEDIPS' Error loading dataset 'qseaGLM': Error in .requirePackage(package) : unable to find required package 'qsea' Error loading dataset 'qseaSet': Error in .requirePackage(package) : unable to find required package 'qsea' The dataset(s) may use package(s) not declared in the DESCRIPTION file. * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See ‘/home/biocbuild/bbs-3.15-data-experiment/meat/MEDIPSData.Rcheck/00check.log’ for details.