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This page was generated on 2022-10-18 14:50:11 -0400 (Tue, 18 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for DmelSGI on nebbiolo1


To the developers/maintainers of the DmelSGI package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 95/410HostnameOS / ArchINSTALLBUILDCHECK
DmelSGI 1.28.1  (landing page)
Mike Smith
Snapshot Date: 2022-10-18 07:30:03 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/DmelSGI
git_branch: RELEASE_3_15
git_last_commit: 5f759eb
git_last_commit_date: 2022-08-31 09:06:49 -0400 (Wed, 31 Aug 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DmelSGI
Version: 1.28.1
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings DmelSGI_1.28.1.tar.gz
StartedAt: 2022-10-18 11:18:38 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 11:19:31 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 53.0 seconds
RetCode: 0
Status:   OK  
CheckDir: DmelSGI.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:DmelSGI.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings DmelSGI_1.28.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/DmelSGI.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DmelSGI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DmelSGI’ version ‘1.28.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DmelSGI’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 138.5Mb
  sub-directories of 1Mb or more:
    data  137.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/DmelSGI.Rcheck/00check.log’
for details.



Installation output

DmelSGI.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL DmelSGI
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘DmelSGI’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DmelSGI)

Tests output


Example timings

DmelSGI.Rcheck/DmelSGI-Ex.timings

nameusersystemelapsed
ChromatinSet-package3.0020.0963.099
DPiM0.0120.0020.014
FBgn2anno0.2520.0120.263
Features0.0030.0000.003
Interactions1.5270.1081.634
Intogen0.0090.0000.010
RohnEtAl0.0020.0000.003
SKDdata0.2800.0160.297
SelectedClusters0.0000.0010.001
SelectedClustersComplexes0.0000.0000.001
TID2HUGO0.0030.0010.004
applyDimensionReduction0.0000.0010.001
callInteractions0.0000.0010.001
datamatrix3.0560.0813.136
estimatePairwiseInteractions0.0000.0020.002
fitepistasis0.0970.0130.110
getBaseDir000
grid.spider0.0010.0010.002
hrNames0.0000.0010.001
learnCoComplexityFct0.0000.0010.001
mainEffects0.0580.0000.058
myHeatmap0.0010.0000.001
mymedpolish0.0010.0000.001
orderDim0.0010.0000.001
orderSpiderAxis0.0010.0000.000
pimatrix0.4030.0600.463
plot2Phenotypes0.0020.0000.002
plotHairballLabels0.0010.0000.001
qualityControlFeature0.0030.0000.003
qualityControlGene0.010.000.01
selectByStability0.0010.0000.001
stabilitySelection0.0530.0040.057
subSampleForStabilitySelection0.0420.0040.046
subSampleForStabilitySelectionFct0.0010.0000.001
toMatrix0.0010.0000.000
toRaster000
trsf0.0000.0000.001