############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL viper ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'viper' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'viper' finding HTML links ... done aREA html aecdf html approxk2d html aracne2regulon html aracne2regulon4cnv html as.dist.signatureDistance html bootstrapTtest-methods html bootstrapViper html bootstrapmsviper html comNames html distMode html fcvarna html filterCV-methods html filterColMatrix html filterRowMatrix html frcv html frvarna html groupPwea3 html integrateSignatures html ledge html loadExpset html msviper-class html msviper html msviperAnnot html msviperClass html msviperCombinatorial html msviperSynergy html plot.msviper html pruneRegulon html pwea3NULLf html pwea3NULLgroups html regulon-class html rowTtest-methods html scale.signatureDistance html scaleGroups html shadow html shadowRegulon html sigT html signatureDistance-class html signatureDistance html summary.msviper html ttestNull-methods html viper html viperRPT html viperSignature-class html viperSignature-methods html viperSimilarity html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viper) Making 'packages.html' ... done