############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL treeio ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'treeio' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'treeio' finding HTML links ... done Nnode.treedata html as.treedata html as.ultrametric html beast-parser html drop.tip-methods html get-placements html get.tree html get.treetext-methods html getNodeNum html is.ggtree html isTip html jplace-class html label_branch_paml html mask html merge_tree html print.treedataList html raxml2nwk html read-jtree html read.astral html read.codeml html read.codeml_mlc html read.fasta html read.hyphy html read.hyphy.seq html read.iqtree html read.jplace html read.mcmctree html read.mega_tabular html read.newick html read.nhx html read.paml_rst html read.phylip html read.phylip.seq html read.phylip.tree html read.phyloxml html read.r8s html read.raxml html read.treeqza html reexports html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-treeio/00new/treeio/help/as.treedata.html rename_taxa html rescale_tree html root-method html tree_subset html treeio-package html write-jtree html write.beast html write.beast.newick html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (treeio) Making 'packages.html' ... done