############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf transcriptR.buildbin-libdir && mkdir transcriptR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=transcriptR.buildbin-libdir transcriptR_1.23.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'transcriptR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'transcriptR' finding HTML links ... done ChipDataSet-class html TranscriptionDataSet-class html addFeature-methods html annot html finding level-2 HTML links ... done annotateTranscripts-methods html breakTranscriptsByPeaks-methods html cds html constructCDS html constructTDS html detectTranscripts-methods html estimateBackground-methods html estimateGapDistance-methods html exportCoverage-methods html getConfusionMatrix-methods html getGenomicAnnot-methods html getPeaks-methods html getPredictorSignificance-methods html getProbTreshold-methods html getQuadProb-methods html getTestedGapDistances-methods html getTranscripts-methods html peaksToBed-methods html plotErrorRate-methods html plotFeatures-methods html plotGenomicAnnot-methods html plotROC-methods html predictStrand-methods html predictTssOverlap-methods html show html tds html transcriptsToBed-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'transcriptR' as transcriptR_1.23.1.zip * DONE (transcriptR)