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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL surfaltr
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'surfaltr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'surfaltr'
    finding HTML links ... done
    Crb1                                    html  
    align_org_prts                          html  
    align_prts                              html  
    check_tmhmm_install                     html  
    clean_data                              html  
    ensembl_db_retrieval                    html  
    format_ids                              html  
    get_aas                                 html  
    get_pairs                               html  
    get_phobius                             html  
    get_prts                                html  
    get_tmhmm                               html  
    graph_from_aas                          html  
    graph_from_ids                          html  
    graph_prots                             html  
    hpa_genes                               html  
    hpa_mouse_genes                         html  
    merge_trans                             html  
    plot_isoforms                           html  
    process_tmhmm                           html  
    rank_prts                               html  
    run_phobius                             html  
    split_fasta                             html  
    test_surfaltr                           html  
    tmhmm_fix_path                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (surfaltr)
Making 'packages.html' ... done