############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf strandCheckR.buildbin-libdir && mkdir strandCheckR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=strandCheckR.buildbin-libdir strandCheckR_1.13.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'strandCheckR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'strandCheckR' finding HTML links ... done checkPairedEnd html dot-calculateStrandCoverage html dot-calculateStrandNbReads html dot-concatenateAlignments html dot-getWinInSequence html dot-keptProbaWin html dot-keptReadFragment html dot-sequenceInfoInPartition html dot-summarizeHist html filterDNA html getStrandFromBamFile html getStrandFromReadInfo html finding level-2 HTML links ... done getWinOverlapEachIRange html getWinOverlapEachReadFragment html getWinOverlapGRanges html intersectWithFeature html plotHist html plotWin html strandCheckR-package html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'strandCheckR' as strandCheckR_1.13.0.zip * DONE (strandCheckR)