##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL spiky
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'spiky' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spiky'
    finding HTML links ... done
    add_frag_info                           html  
    bam_to_bins                             html  
    bin_pmol                                html  
    covg_to_df                              html  
    dedup                                   html  
    find_spike_contigs                      html  
    genbank_mito                            html  
    generate_spike_fasta                    html  
    get_base_name                           html  
    get_binned_coverage                     html  
    get_merged_gr                           html  
    get_spike_depth                         html  
    get_spiked_coverage                     html  
    kmax                                    html  
    kmers                                   html  
    methylation_specificity                 html  
    model_bam_standards                     html  
    model_glm_pmol                          html  
    parse_spike_UMI                         html  
    phage                                   html  
    predict_pmol                            html  
    process_spikes                          html  
    rename_spike_seqlevels                  html  
    rename_spikes                           html  
    scan_genomic_contigs                    html  
    scan_methylation_specificity            html  
    scan_spike_contigs                      html  
    scan_spike_counts                       html  
    scan_spiked_bam                         html  
    seqinfo_from_header                     html  
    spike                                   html  
    spike_bland_altman_plot                 html  
    spike_counts                            html  
    spike_cram_counts                       html  
    spike_read_counts                       html  
    spiky-methods                           html  
    ssb_res                                 html  
    testGR                                  html  
    tile_bins                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spiky)
Making 'packages.html' ... done